| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 456464 | 47 (0.500) | 10 (0.110) | 9/194 | NT | 18.1% | intergenic (+33/‑213) | tig/clpP | peptidyl‑prolyl cis/trans isomerase (trigger factor)/proteolytic subunit of ClpA‑ClpP and ClpX‑ClpP ATP‑dependent serine proteases |
| ? | NC_000913 | = 456490 | 45 (0.500) | intergenic (+59/‑187) | tig/clpP | peptidyl‑prolyl cis/trans isomerase (trigger factor)/proteolytic subunit of ClpA‑ClpP and ClpX‑ClpP ATP‑dependent serine proteases | |||||
ACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGAAATATGGTGATGCCGTACCCATAACACAG > NC_000913/456322‑456602 | acaTGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAgg < 1:397836/145‑1 (MQ=255)acaTGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAgg > 2:397836/1‑145 (MQ=255) caTGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCg < 1:259589/148‑1 (MQ=255) cAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAggcccaccacct > 1:218670‑M1/1‑136 (MQ=255) ttGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGAAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAgg < 3:424230/148‑1 (MQ=255) tGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAggt < 4:808525/148‑1 (MQ=255) tGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAA > 4:737961‑M1/1‑130 (MQ=255) tGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAA < 3:737961‑M1/130‑1 (MQ=255) tGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAA < 2:724921‑M1/130‑1 (MQ=255) tGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAA > 1:724921‑M1/1‑130 (MQ=255) tGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAggcccaccacctggcggtgacgg < 2:218670‑M1/148‑24 (MQ=255) ggCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGgtggtg > 3:1090550/1‑137 (MQ=255) ggCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGgtggtg < 4:1090550/137‑1 (MQ=255) ggCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAggcccaccacctggcggtgacggg > 2:82436‑M1/1‑97 (MQ=255) ggCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAggcccaccacctggcggtgacggg < 1:82436‑M1/121‑25 (MQ=255) aaagTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGa > 3:560017/1‑139 (MQ=255) aaagTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGa < 4:560017/139‑1 (MQ=255) gTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGt < 3:1133877/119‑1 (MQ=255) gTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGt > 4:1133877/1‑119 (MQ=255) gAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAagcccaccacctggcggtgacgggcctttg > 4:924722‑M1/1‑78 (MQ=255) gAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAagcccaccacctggcggtgacgggcctttg < 3:924722‑M1/108‑31 (MQ=255) aaaaGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑ttttt < 2:235673/106‑1 (MQ=255) aaaaGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑ttttt > 1:235673/1‑106 (MQ=255) ttcagtcACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCgg < 1:476534/142‑1 (MQ=255) ataaaCCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTg > 2:359621/3‑107 (MQ=255) aGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAggcccaccacctggcggtgacg < 2:5113‑M1/95‑23 (MQ=255) aGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAggcccaccacctggcggtgacg > 1:5113‑M1/1‑73 (MQ=255) aGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTg < 1:359621/107‑1 (MQ=255) aGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGc > 4:52739/1‑120 (MQ=255) aGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGc < 3:52739/120‑1 (MQ=255) aGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCgg > 2:759506/1‑148 (MQ=255) gAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGcc < 1:876703/76‑1 (MQ=255) gAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGcc > 2:876703/1‑76 (MQ=255) aaaCCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTc < 4:462748/144‑1 (MQ=255) aaaCCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTc > 3:462748/1‑144 (MQ=255) aCCACTTTCATCGATCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAgg < 2:61026/71‑1 (MQ=255) aCCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAgg > 1:61026/1‑71 (MQ=255) aCCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGa < 4:507079/109‑1 (MQ=255) aCCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGa > 3:507079/1‑109 (MQ=255) aCCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGtt < 1:759506/148‑1 (MQ=255) gatgaACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTaaca < 1:554150/140‑1 (MQ=255) gatgaACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTaaca > 2:554150/1‑140 (MQ=255) aaCCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAagcccaccacctggcggtgacgggcctttg < 4:769524‑M1/78‑31 (MQ=255) aaCCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAagcccaccacctggcggtgacgggcctttg > 3:769524‑M1/1‑48 (MQ=255) aCCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCgg > 2:633182/1‑122 (MQ=255) aCCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCgg < 1:633182/122‑1 (MQ=255) ccAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑ttttt < 2:1106693/76‑1 (MQ=255) ccAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑ttttt > 1:1106693/1‑76 (MQ=255) cagcagGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCgg < 4:1128964/120‑1 (MQ=255) cagcagGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCgg > 3:1128964/1‑120 (MQ=255) tAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGgtg > 3:636979/1‑113 (MQ=255) tAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGgtg < 4:636979/113‑1 (MQ=255) tAATTTACGCAGCATAACGCGCTAAATCCGCTCAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTc < 3:740738/72‑1 (MQ=255) tAATTTACGCAGCATAACGCGCTAAATCCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTc > 4:740738/1‑72 (MQ=255) aTTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGc < 3:362777/81‑1 (MQ=255) aTTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGc > 4:362777/1‑81 (MQ=255) cagcaTAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGCTTTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGAAATATGGTGAt > 1:480397/1‑148 (MQ=255) cagcaTAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTc > 2:974921/1‑63 (MQ=255) cagcaTAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTc < 1:974921/63‑1 (MQ=255) cgcgCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAg < 3:426176/84‑1 (MQ=255) cgcgCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAg > 4:426176/1‑84 (MQ=255) aaaTTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGaa < 3:350470/123‑1 (MQ=255) aaaTTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGaa > 4:350470/1‑123 (MQ=255) tCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCAGTGTTAGCGTAACAACAAAAGGTTGTTATGCTTGAAata < 1:328625/122‑1 (MQ=255) tCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATCTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGAAata > 2:328625/1‑122 (MQ=255) cacaAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGAAATATGGTGATGCCGTACCCATAACACAg < 1:581943/144‑1 (MQ=255) cacaAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGAAATATGGTGATGCCGTACCCATAACACAg > 2:581943/1‑144 (MQ=255) caAAGGCCCGTCACCGCCAGGTGGTGGGC‑Ttttgtgcgaatttagcgcgttatgctgcgtaaattacgcctgctggttcatcagctcgttgaaagtggtttctttttc < 3:924722‑M2/108‑79 (MQ=255) caAAGGCCCGTCACCGCCAGGTGGTGGGC‑Ttttgtgcgaatttagcgcgttatgctgcgtaaattacgcctgctggttcatcagctcgttgaaagtggtttctttttc > 4:924722‑M2/1‑30 (MQ=255) caAAGGCCCGTCACCGCCAGGTGGTGGGC‑Ttttgtgcgaatttagcgcgttatgctgcgtaaattacgcctgctggtt < 4:769524‑M2/78‑49 (MQ=255) caAAGGCCCGTCACCGCCAGGTGGTGGGC‑Ttttgtgcgaatttagcgcgttatgctgcgtaaattacgcctgctggtt > 3:769524‑M2/1‑30 (MQ=255) | ACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGC‑TTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGAAATATGGTGATGCCGTACCCATAACACAG > NC_000913/456322‑456602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |