| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 558,654 | C→T | 5.9% | T148I (ACC→ATC) | sfmA → | FimA homolog, function unknown |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 558,654 | 0 | C | T | 5.9% | 339.0 / 8.5 | 101 | T148I (ACC→ATC) | sfmA | FimA homolog, function unknown |
| Reads supporting (aligned to +/- strand): ref base C (47/48); new base T (3/3); total (50/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
TTATTGGCCATTGCATCCAGTACCAATACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGAATAATCAAAACCACGTTGTT > NC_000913/558521‑558770 | ttATTGGGCATTGCATCCAGTACCAATACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCAtt < 4:381399/148‑1 (MQ=255) ccATTGCATCCAGTACCAATACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGttctt < 4:551165/137‑1 (MQ=255) ccATTGCATCCAGTACCAATACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGttctt > 3:551165/1‑137 (MQ=255) aTTGCATCCAGTACCAATACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCAc > 2:553766/1‑148 (MQ=255) ccAGTACCAATACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATaa > 4:1040215/1‑148 (MQ=255) aCCAATACAACATCAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCa < 3:1040215/148‑1 (MQ=255) aaTACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCg > 4:488919/1‑148 (MQ=255) tACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTta < 3:674508/135‑1 (MQ=255) tACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTta > 4:674508/1‑135 (MQ=255) acaacaacaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATaa < 3:1138070/137‑1 (MQ=255) acaacaacaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATaa > 4:1138070/1‑137 (MQ=255) caacaacaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATaa > 4:900023/1‑136 (MQ=255) caacaacaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATaa < 3:900023/136‑1 (MQ=255) caacaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAg > 2:44152/1‑148 (MQ=255) caacaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAg > 2:481792/1‑148 (MQ=255) caacaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAg < 3:488919/148‑1 (MQ=255) acaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCa > 3:1021613/1‑103 (MQ=255) acaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCa < 4:1021613/103‑1 (MQ=255) acaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGt > 1:602124/1‑126 (MQ=255) acaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGt < 2:602124/126‑1 (MQ=255) acaGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTg > 4:917079/1‑148 (MQ=255) gCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCa < 3:389293/133‑1 (MQ=255) gCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCa > 4:389293/1‑133 (MQ=255) gCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCAt < 1:481792/148‑1 (MQ=255) cAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGAGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATc < 1:553766/148‑1 (MQ=255) aCGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAACGTTGGTCCCGGGGATCAA‑Gttctg > 2:984168/1‑104 (MQ=38) aCGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAACGTTGGTCCCGGGGATCAA‑Gttctg < 1:902305/105‑2 (MQ=38) aCGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAACGTTGGTCCCGGGGATCAA‑Gttctg < 1:984168/105‑2 (MQ=37) aCGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAACGTTGGTCCCGGGGATCAA‑Gttctg > 2:902305/1‑104 (MQ=38) ggTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATcagcag < 1:44152/148‑1 (MQ=255) aTTGAAATACTTGATAATACATCCGCAATTCTCAAAACTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGgcaagcaa < 3:917079/148‑1 (MQ=255) aaaTACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAATCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGgca > 1:740655/1‑139 (MQ=255) aaaTACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGgca < 2:740655/139‑1 (MQ=255) aaTACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAg > 3:236819/1‑123 (MQ=255) aaTACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAg < 4:236819/123‑1 (MQ=255) aTACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGt < 3:234364/102‑1 (MQ=255) aTACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGt > 4:234364/1‑102 (MQ=255) cTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCAt < 4:83450/124‑1 (MQ=255) cTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCAt > 3:83450/1‑124 (MQ=255) taataCATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACt > 1:472874/1‑148 (MQ=255) ataCATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACttt < 2:472874/148‑1 (MQ=255) ccGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTtattat > 2:727104/1‑148 (MQ=255) gCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCAttttt < 4:185969/76‑1 (MQ=255) gCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCAttttt > 3:185969/1‑76 (MQ=255) cAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGAcgcg > 2:684768/1‑134 (MQ=255) cAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGAcgcg < 1:684768/134‑1 (MQ=255) tctcAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACa > 2:820791/1‑97 (MQ=255) tctcAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACa < 1:820791/97‑1 (MQ=255) cAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGATCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGaa > 2:860294/1‑148 (MQ=255) aaCCTGATGGGAATAGCTTCTCAACCAACCAGACC‑TTGATCCCCGGGACCAACGttcttc < 3:760930/60‑1 (MQ=255) aaCCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGttcttc > 4:760930/1‑60 (MQ=255) aaCCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAg < 3:843850/94‑1 (MQ=255) aaCCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAg > 4:843850/1‑94 (MQ=255) tGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAg < 2:895208/77‑1 (MQ=255) tGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAg > 1:895208/1‑77 (MQ=255) gATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACa > 2:648276/1‑87 (MQ=255) gATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACa < 1:648276/87‑1 (MQ=255) aTGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCGGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGAATAATCaaa < 1:727104/148‑1 (MQ=255) ggAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGt < 2:165161/86‑1 (MQ=255) ggAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGt > 1:165161/1‑86 (MQ=255) ggAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAAt < 2:462463/107‑1 (MQ=255) ggAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGATATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAAt > 1:462463/1‑107 (MQ=255) aaTAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGt > 2:110610/1‑63 (MQ=255) aaTAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGt < 1:110610/63‑1 (MQ=255) aaTAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTtta > 2:1017830/1‑121 (MQ=255) aaTAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTtta < 1:1017830/121‑1 (MQ=255) tAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCa < 1:1096006/85‑1 (MQ=255) tAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCa > 2:1096006/1‑85 (MQ=255) tAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTtta > 4:915312/1‑119 (MQ=255) tAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTtta < 3:915312/119‑1 (MQ=255) aGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGc < 3:535504/69‑1 (MQ=255) aGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGc > 4:535504/1‑69 (MQ=255) aGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGc < 1:871370/69‑1 (MQ=255) aGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGc > 2:871370/1‑69 (MQ=255) cTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAgg > 1:514594/1‑90 (MQ=255) cTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAgg < 2:514594/90‑1 (MQ=255) ttCTCAACCAACCAGAAC‑TTGATCCCCGGGATCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGAATAATCAAAACCACgttgtt < 1:860294/148‑1 (MQ=255) ctcAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGAATAATCAAAACCACgttgtt > 1:238436/1‑146 (MQ=255) ctcAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGAATAATCAAAACCACgttgtt < 2:238436/146‑1 (MQ=255) tcAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAg > 4:1053669/1‑74 (MQ=255) tcAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAg < 3:1053669/74‑1 (MQ=255) caaccaacCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAgg > 1:521212/1‑61 (MQ=255) caaccaacCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAgg < 2:521212/61‑1 (MQ=255) accaaccaGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATgag > 3:948595/1‑116 (MQ=255) caaccaGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGc > 4:306512/1‑72 (MQ=255) caaccaGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGc < 3:306512/72‑1 (MQ=255) caGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGc > 4:254772/1‑68 (MQ=255) caGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGc < 3:254772/68‑1 (MQ=255) aGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTttatta < 2:611552/105‑1 (MQ=255) aGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTttatta > 1:611552/1‑105 (MQ=255) gAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCAt > 4:842549/1‑68 (MQ=255) gAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCAt < 3:842549/68‑1 (MQ=255) aaC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCAt < 3:709975/67‑1 (MQ=255) aaC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGAACCGGTACAAGTGCAt > 4:709975/1‑67 (MQ=255) aC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGgcaa < 3:738435/77‑1 (MQ=255) aC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGgcaa > 4:738435/1‑77 (MQ=255) aC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGAATAATCAAAACCa > 4:25090/1‑125 (MQ=255) aC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGAATAATCAAAACCa < 3:25090/125‑1 (MQ=255) ttGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGa < 4:610446/110‑1 (MQ=255) ttGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGa > 3:610446/1‑110 (MQ=255) | TTATTGGCCATTGCATCCAGTACCAATACAACAACAGCAACGGGTGTCGGTATTGAAATACTTGATAATACATCCGCAATTCTCAAACCTGATGGGAATAGCTTCTCAACCAACCAGAAC‑TTGATCCCCGGGACCAACGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATATGAATAATCAAAACCACGTTGTT > NC_000913/558521‑558770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |