Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,2680TC20.0% 113.9 / 17.1 66intergenic (+474/+168)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
Reads supporting (aligned to +/- strand):  ref base T (22/30);  new base C (6/7);  total (28/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.25e-01
Rejected as consensus: Frequency below/above cutoff threshold.

GATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑A‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAA  >  NC_000913/4296005‑4296540
                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                    
gATTTGGCGTGATTTTGTAGGTCGGTTAAGGCAGTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTACGC‑CGCATcc                                                                                                                                                                                                                                                                            <  1:851595/273‑1 (MQ=255)
    tAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCCACGCTTAACGCGTCTTATCAGACCTACGCCAGACAGCGCAATACCATGTTTATGCGTGATTTTT‑TAGGTCGGATATGGCGTTTTCGC‑CGCATCCTACGTc                                                                                                                                                                                                                                                                      >  3:17542/1‑275 (MQ=11)
           aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TTGGTCGGATAAGGCGTTTACGA‑GGCATACGACTTCAATGCCTGa                                                                                                                                                                                                                                                             >  2:16255/1‑277 (MQ=255)
           aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAGGCGACGCTTAACGCGTCGTATCAGGCCTACGCCAGACCGCGCAAAACCCTGATTTAGCGTCATTTTG‑GAGCTCGGATACGGCGTTAACGC‑ATCATCTCACATCAATGACTGa                                                                                                                                                                                                                                                             >  4:279499/1‑277 (MQ=11)
                      cGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTACGC‑CGCATCCGa                                                                                                                                                                                                                                                                          >  1:292721/1‑253 (MQ=37)
                      cGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATCTAGCGTGATTTTGTCGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGGGACGCTTAACGCGTCTTATCAGGCCTACGCAAGACAGCGCCATAGCCTGATTCAGCGTGATTTTG‑TAGATCTGATAAGGCGTTTACGC‑CGAGTCCGACATCCATGCCTGATGCGACg                                                                                                                                                                                                                                                      >  3:570425/1‑273 (MQ=11)
                      agtaTAAGGCATTTACGCCGCACCCGAAATCAGCGCCTGATGCGACGCTGGCCGCGTCTTATCAGACCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCTACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTACGC‑CGCATCCGACATCAATGCCTGATGCGACGCttgc                                                                                                                                                                                                                                                 <  2:275826/275‑3 (MQ=11)
                          tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTACGC‑CGCATCCGACATc                                                                                                                                                                                                                                                                      <  3:292720/253‑1 (MQ=37)
                                 ttcagcccgcGTCCGACATCAACGCCTGTTGAGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCTTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCAGCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTACGC‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                                                                                                                                       <  2:203568/271‑1 (MQ=11)
                                        cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTACGC‑CGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                                                                                                                                  >  1:738324/1‑275 (MQ=14)
                                                                                                                                                                        cGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACCGCGCCATAGCCTGATTTAGCGTTATTTTGTAGGTCCGATAAGGCGTTTCAG‑CCGCATCCGACCTCCATGCCTGTTGCGTCGCTTGCATCGTCTTATCATACCTATCTTAACCGTTTGtt                                                                                              >  4:101127/1‑278 (MQ=11)
                                                                                                                                                                             gATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCAACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa                                                                                            >  3:372131/1‑275 (MQ=9)
                                                                                                                                                                              aTGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGCTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATTAGGCCTATCTTAACCGTTGGTTaa                                                                                            >  1:396588/1‑274 (MQ=9)
                                                                                                                                                                               tGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtttt                                                                                        >  2:738129/1‑277 (MQ=12)
                                                                                                                                                                                  gACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAAAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCCTATTATCAGGCCTATCTTAACCTTCGGTTAATTTTTCa                                                                                     >  2:525676/1‑277 (MQ=11)
                                                                                                                                                                                   acgatggcctcgTCTTATCAGGACTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGAATAAGGCGTTTATGC‑CGCAGCCGCCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa                                                                                   <  2:757557/268‑1 (MQ=11)
                                                                                                                                                                                   aCGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa                                                                                   <  2:556154/278‑1 (MQ=255)
                                                                                                                                                                                     gtttgccggtgcTTATCAGGCCTACGCCAGACAGCGCAATCGCCTGATTTAGCGTGATTTTG‑TATGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa                                                                                    <  1:528728/264‑1 (MQ=255)
                                                                                                                                                                                      tctgaccggTCTTAACCGGCCGACGCCAGGCAGCGCAATAGCCTGATTTAGCGTTATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCAACCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa                                                                                   <  1:475797/267‑1 (MQ=11)
                                                                                                                                                                                        tgccgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTGGGCCCGTCGTACAAGGCCTTTCTTAACCGTTGGGTAATTTTTCaatattat                                                                              >  4:808209/4‑272 (MQ=11)
                                                                                                                                                                                         gccgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACCGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATTCCTGATGCGACGCTTGCCCCGTCTTTTCCGGCCGATCTTAACCGTTTGTTTATTTTTCAACCTCtt                                                                              >  4:96762/3‑277 (MQ=11)
                                                                                                                                                                                          gcgcgTCTTATCAGGCCGACGCCAAAAAGCCAAATGGCCTGAGTTAGCGTGATTTTG‑TAGGGCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGAGAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActct                                                                               <  1:735948/274‑1 (MQ=14)
                                                                                                                                                                                           cggctCTTATCAGTCTTACGCCAGAAAGCGCAATAGCCTTATTTAGCGTGATTTTT‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGCTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCtt                                                                              <  1:855224/271‑1 (MQ=14)
                                                                                                                                                                                                 ttATCAGGCCTACGCCAGACACCGAAATGGCCTGATTTAGTGTGATTTTG‑TAGGTGGGATACGGCGTTTATGC‑CGCATCCTAAATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc                                                                        <  3:793239/275‑1 (MQ=14)
                                                                                                                                                                                                  tATCAGGCCTACGCCAAACAGCGAGATAGCCATATTTAGCGGGATTTTG‑TGGTGTGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGCCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGAAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc                                                                        <  3:543354/274‑1 (MQ=14)
                                                                                                                                                                                                   aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAccc                                                                       <  1:847752/274‑1 (MQ=255)
                                                                                                                                                                                                        tccTACGCCAGACAGGGCAATAGCCTGATTTAGCGTTATTTTG‑TAGGTCGGATAAGGCCTTTATGC‑CGCAGTCGACATCAACGCCTGATGCGAAGCTTAACGCGTCTTATCAGGCCGACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa                                                              <  2:453187/277‑1 (MQ=14)
                                                                                                                                                                                                         gataagCCATACAGCGCAATAGCCTGATTTAACGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGGCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa                                                              <  2:531710/272‑1 (MQ=255)
                                                                                                                                                                                                         cctcagCCCGACAGCGCAATAGCCTGATTTAGCGGGATTTTG‑TAGGTCGGAGAAGGCGTTTATTC‑CGCATCCGCCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa                                                              <  2:533887/272‑1 (MQ=14)
                                                                                                                                                                                                           tACGACATACAGCGCAATAGCCTGATTTAGCGTGATTTGT‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCTACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa                                                              <  1:709885/275‑1 (MQ=255)
                                                                                                                                                                                                            gcgtcAGACAGTGCAATAGCCTGATTTAGCGTTATTTTG‑ACTGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa                                                              <  1:596979/270‑1 (MQ=14)
                                                                                                                                                                                                            aagCCTGACATCGCAATTGCCTGATTTAGCGTGATTTTG‑TAGGTTGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa                                                              <  1:460094/272‑1 (MQ=255)
                                                                                                                                                                                                             cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTACTTTTTCAAACTCTTCACACCCGGTATCAAACCCtt                                                         >  2:117641/1‑278 (MQ=255)
                                                                                                                                                                                                             cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCCCACCCGGTATCAAAcc                                                            >  1:133623/1‑275 (MQ=255)
                                                                                                                                                                                                             cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAcc                                                            >  1:479618/1‑275 (MQ=255)
                                                                                                                                                                                                             cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCAACCGACATCAACGCCTGATGCGACGCTTAGCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCtt                                                         <  2:571865/278‑1 (MQ=255)
                                                                                                                                                                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTCTCAAACCCTTCCAt                                                     >  2:619748/1‑277 (MQ=255)
                                                                                                                                                                                                                   aCAGCGCAATAGCCTGAGTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCAGCAGAAATCAACGCCTGATGTGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATa                                                    <  2:173702/277‑1 (MQ=255)
                                                                                                                                                                                                                       cgcAATAGGCTTATTTAGCGTGAGTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCt                                               <  2:589271/278‑1 (MQ=255)
                                                                                                                                                                                                                       cgcAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCATACCCGGTATCAAACCCTTCCATACa                                                  >  1:744819/1‑275 (MQ=255)
                                                                                                                                                                                                                       cgcAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACCCTTTTCACCCGATAACAAACCCTTCCATACAGc                                                >  4:16018/1‑277 (MQ=14)
                                                                                                                                                                                                                       cgcAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTACCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCAGCCGACACCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATATTAACCGTTGGTTAATTTTTCAAACTCTTCACACACGGTATCAAACCCTTCAATACAGCt                                               >  2:400451/1‑278 (MQ=17)
                                                                                                                                                                                                                        gcAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAcc                                                            <  2:16018/264‑1 (MQ=255)
                                                                                                                                                                                                                          aagtgCCTGATTGTGTATGAGTTTG‑TGGGTAGGAGATGGC‑CTTATGCGCGCATACGAAAGAAACGCCTGAGTCGACCATTAACGCGTCTTATCGTGCCTACGCCAGAAAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCt                                               <  3:157510/271‑1 (MQ=17)
                                                                                                                                                                                                                          aagatccggATTTGGCGTGTTTTTG‑TGAGTCGAATAAGGACTTTTCGC‑CTCGTCCGAAATCACGGCCGGATGCGAAGGTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTCAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCt                                               <  3:32040/267‑1 (MQ=17)
                                                                                                                                                                                                                            tAGCCTGATTTAGCGTGATTTTG‑TAGGTCTGATAAGGCGTTTCTGC‑CGCATCCGACATCAACGTCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATATTGGAGGTCGGATATGTCTTTT‑AAGCTCCCTTCGACATCCATCAGAGTCGCGACACTTGCCCCTTTTTATCAGGCCTATCTTCATCGTAGGTACGTTTGTCAAACTCTTCACACCCGGTACTAAACCCTTCATTCCACCTCAga                                           >  4:740384/1‑276 (MQ=9)
                                                                                                                                                                                                                            tAGCCAGATTGTGCGTAAGTTGG‑GAGGTCGGATAAGGGGATAATGC‑CAAATCCGACATGAAAGCATGATGCGACGCTTAACGCGTCTTATCAGGGCGACGCCAGACAGCGCAATAGCCTGATTTGGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGATTCTTATCAGGCCTATCTTAACCGTGGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCt                                               <  3:450012/273‑1 (MQ=17)
                                                                                                                                                                                                                               ccTGATTTAGCGTGAGTTGG‑TAGGTCGAATAAGGGTTTTACAC‑CGCATCCGACAACCACGCCTGATGCGACGCTTAACGGTTCTTAGCAGGCCCACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTG‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTTTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCAGACAGCTCAGGt                                          <  2:689601/275‑1 (MQ=17)
                                                                                                                                                                                                                                  gATTTAGCGTGATTTTG‑TAGGTCGAATAAGGCGATTATGC‑CGCAGCCGTCATCAACGCCGTATGCGACGCTTAACGCGTCTTATCAGTCCTACGCCATACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGTCATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGt                                          <  1:570426/272‑1 (MQ=17)
                                                                                                                                                                                                                                   atgtAGCGTGATTTTG‑TAGGCAGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAcc                                    <  2:96762/274‑1 (MQ=255)
                                                                                                                                                                                                                                   aTTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCTACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTCACCGTTGGTTACTTTTTCCAACTCTTCACACCCGTTATCAACCCCTTCCATACCGCTCATGTTCAAcc                                    >  4:117922/1‑277 (MQ=17)
                                                                                                                                                                                                                                   aTTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc                                     <  2:232450/276‑1 (MQ=255)
                                                                                                                                                                                                                                   aTTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTAGCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGACTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCCTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAATCCTTTCTCTACAGCTCAGGGTc                                        >  1:313745/1‑273 (MQ=17)
                                                                                                                                                                                                                                     ttttgcttaTTTTGTTAGGTCGGAGAAGCGGTGTCGGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGGTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc                                     <  3:635764/267‑1 (MQ=18)
                                                                                                                                                                                                                                         cGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCCCGTCTTATCAGGCCTATCTTACCCTTTGGTTAATTTTTCAAACTCCTCACCCCCGGTATCACACCCTTTCATCCACCTCAGTTTCAACCTGtt                                >  3:780677/1‑274 (MQ=14)
                                                                                                                                                                                                                                          gTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa                                                              <  1:460939/244‑1 (MQ=255)
                                                                                                                                                                                                                                             aTTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAACCTCTTCACACCCGGTATCAAACCCTTCCATAAAGCTCAGGTTCAACCAGTGCAgcgc                          >  2:245054/1‑277 (MQ=255)
                                                                                                                                                                                                                                             aTTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACCGCCCAGGTTAAACCCGTTCAGCGcc                         >  4:379600/1‑278 (MQ=255)
                                                                                                                                                                                                                                               tttG‑TAGGTCGGATAAGGCGTTTACGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCt                        <  2:715232/277‑1 (MQ=255)
                                                                                                                                                                                                                                                 tG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCt                        <  1:265808/275‑1 (MQ=255)
                                                                                                                                                                                                                                                         cGGATAAGGCGTTTATGC‑CGCCTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCTAGACAGCGCAATAGACTGATTTAGCGTGATTTTGTATGTCGGATCACGCGTTC‑ACGCCGCATCTGAAATCAATGACTGATGCGACGCTTGCCGCGTCATATCAGGCCTATCCTAAGCGTTTGTTAATTTTTATAACTATTTACACCTGTTATCACACCCTTCCCTACAGATCAGGTGAAACAATTGCAGCTCCTTTTGCtt                 >  3:210721/1‑275 (MQ=14)
                                                                                                                                                                                                                                                            aTAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGGGACGCGTAACGCGTCGTATCAGGCCTACGCCAGACAGCGCTATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACACTTCACACCCGGTATCAAACCCTTCCATACAGCGCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGttctt           <  2:162925/278‑1 (MQ=18)
                                                                                                                                                                                                                                                                ggCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGttcttc          <  1:519487/275‑1 (MQ=255)
                                                                                                                                                                                                                                                                    tttATGA‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCTTCTTATCAAGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGGAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATa    <  2:181804/277‑1 (MQ=255)
                                                                                                                                                                                                                                                                     ttATGC‑CGCAGCCGACATCAAGGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATaaa  <  2:101127/278‑1 (MQ=255)
                                                                                                                                                                                                                                                                      tATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATaaa  >  2:347646/1‑277 (MQ=255)
                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                    
GATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTG‑TAGGTCGGATAAGGCGTTTATGC‑CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTT‑A‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAA  >  NC_000913/4296005‑4296540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑