New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4024564199 (0.990)4 (0.020) 4/272 NT 2.0% coding (258/489 nt) rfaH transcription antitermination protein
?NC_000913 = 4024614 200 (1.050)coding (208/489 nt) rfaH transcription antitermination protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 239 total aligned reads displayed.

CGTTTTAGAGTTTGCGGAACTCGGTATTCTTCACACTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTGCAGTACAGTAAATACCAGGATTGCATAAT  >  NC_000913/4024329‑4024824
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                     
cGTTTTAGAGTTTGCGGAACTCGGTATTCTTCACACTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCAGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCAAGTGGACTATCTCTTGGGACGCGCCAAAG‑GCACGAAAGTGACTGAGACcg                                                                                                                                                                                                                               >  4:105701/1‑275 (MQ=255)
                                                ctTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTcc                                                                                                                                                                               >  2:307592/1‑275 (MQ=255)
                                                                              agcgagcCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACACGCCAAAGCGCACG‑AAGGGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGTTCAAATTCCACAAACAGGGAGTTGGGGGACAAGGGCTCa                                                                                                                                                 >  1:10241/1‑275 (MQ=255)
                                                                                  agcCGCACCATGGGGTTCGGGGAAAATGGCCGAAAAGCCTTGGAACGCGCCTTCGGTAATAATCACCTTAGCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactg                                                                                                                                              <  4:49749/274‑1 (MQ=255)
                                                                                                  tCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGAcgc                                                                                                                                                                                                                                                            <  5:1281021/149‑1 (MQ=255)
                                                                                                    ggTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACgcgc                                                                                                                                                                                                                                                          <  5:27121/149‑1 (MQ=255)
                                                                                                     gTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGcc                                                                                                                                                                                                                                                         >  8:688538/1‑149 (MQ=255)
                                                                                                      tGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCGTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGTGTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCa                                                                                                                                                                                                                                                        >  6:966225/1‑149 (MQ=255)
                                                                                                          aaTGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAgc                                                                                                                                                                                                                                                    >  8:1118696/1‑149 (MQ=255)
                                                                                                             ggCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCa                                                                                                                                                                                                                                                 >  5:1082821/1‑149 (MQ=255)
                                                                                                             ggCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCa                                                                                                                                                                                                                                                 <  5:1453042/149‑1 (MQ=255)
                                                                                                              gCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCa                                                                                                                                                                                                                                                 >  7:657781/1‑148 (MQ=255)
                                                                                                                     aGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTgg                                                                                                                                                                                                                                        <  6:832344/149‑1 (MQ=255)
                                                                                                                      gCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGc                                                                                                                                                                                                                                       <  7:1143373/149‑1 (MQ=255)
                                                                                                                       ccTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCt                                                                                                                                                                                                                                      <  6:58478/149‑1 (MQ=255)
                                                                                                                         ttCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGa                                                                                                                                                                                                                                    <  7:15628/149‑1 (MQ=255)
                                                                                                                         ttCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGa                                                                                                                                                                                                                                    >  8:829665/1‑149 (MQ=255)
                                                                                                                                    cTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTc                                                                                                                                                                                                                         <  5:402864/149‑1 (MQ=255)
                                                                                                                                           aataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTga                                                                                                                                                                                                                  >  5:1017605‑M2/1‑147 (MQ=255)
                                                                                                                                           aataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTga                                                                                                                                                                                                                  >  5:324871‑M2/1‑147 (MQ=255)
                                                                                                                                            ataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGTCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACCGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAAtt                                                                                   >  2:87322/1‑275 (MQ=255)
                                                                                                                                              aatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTgatag                                                                                                                                                                                                               <  5:903478‑M2/149‑6 (MQ=255)
                                                                                                                                               atCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCgg                                                                                                                                                                                                                            <  7:454238/135‑1 (MQ=255)
                                                                                                                                               atCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTgatagt                                                                                                                                                                                                              <  8:21903‑M2/149‑7 (MQ=255)
                                                                                                                                                tCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGTTTTATATACCGATAGCTGAGGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTgatagtc                                                                                                                                                                                                             >  8:864170‑M2/1‑142 (MQ=255)
                                                                                                                                                 cACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCg                                                                                                                                                                                                            >  7:381286/1‑149 (MQ=255)
                                                                                                                                                 cACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCg                                                                                                                                                                                                            >  6:315306/1‑149 (MQ=255)
                                                                                                                                                  aCCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtccc                                                                                                                                                                                                            <  7:148833‑M1/149‑60 (MQ=255)
                                                                                                                                                  aCCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGt                                                                                                                                                                                                           <  5:225469/149‑1 (MQ=255)
                                                                                                                                                  aCCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATg                                                                                                                                                                                                     >  2:4370/1‑155 (MQ=255)
                                                                                                                                                    cTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCt                                                                           <  2:34831/275‑1 (MQ=255)
                                                                                                                                                     ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGt                                                                                                                                                                                                        >  5:1163847/1‑149 (MQ=255)
                                                                                                                                                     ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGt                                                                                                                                                                                                        >  8:746061/1‑149 (MQ=255)
                                                                                                                                                     ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGt                                                                                                                                                                                                        <  7:1198505/149‑1 (MQ=255)
                                                                                                                                                      tATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTa                                                                                                                                                                                                       <  8:1355918/149‑1 (MQ=255)
                                                                                                                                                       aTCACCCGGATAAGGGGTTGTCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTAt                                                                                                                                                                                                      <  5:112907/149‑1 (MQ=255)
                                                                                                                                                       aTCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTAt                                                                                                                                                                                                      <  7:1419914/149‑1 (MQ=255)
                                                                                                                                                          aCCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAGCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGaa                                                                                                                                                                                                   <  7:572920/149‑1 (MQ=255)
                                                                                                                                                           cccGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGAc                                                                                                                                                                                                                                                              >  7:985358/1‑90 (MQ=255)
                                                                                                                                                           cccGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAAt                                                                                                                                                                                                  >  5:962173/1‑149 (MQ=255)
                                                                                                                                                           cccGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAAt                                                                                                                                                                                                  <  8:102873/149‑1 (MQ=255)
                                                                                                                                                            ccGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGacac                                                                                                                                                                                                                                 <  6:614058/117‑1 (MQ=255)
                                                                                                                                                             cGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCa                                                                                                                                                                                                >  7:66973/1‑149 (MQ=255)
                                                                                                                                                               gATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCg                                                                                                                                                                                                            >  8:259832/1‑135 (MQ=255)
                                                                                                                                                                    ggggTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑ATGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTgg                                                                                                                                                                                         <  6:1123665/149‑1 (MQ=255)
                                                                                                                                                                    ggggTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTgg                                                                                                                                                                                         <  5:1367612/149‑1 (MQ=255)
                                                                                                                                                                          gCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCaaa                                                                                                                                                                                   <  6:1126621/149‑1 (MQ=255)
                                                                                                                                                                          gCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCaaa                                                                                                                                                                                   <  6:1082821/149‑1 (MQ=255)
                                                                                                                                                                           ccGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGa                                                                                                                                                                                                                                    <  6:1429502/99‑1 (MQ=255)
                                                                                                                                                                             ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                                                                                                                                                >  7:1305031/1‑149 (MQ=255)
                                                                                                                                                                             ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                                                                                                                                                <  6:903478/149‑1 (MQ=255)
                                                                                                                                                                             ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                                                                                                                                                <  8:395293/149‑1 (MQ=255)
                                                                                                                                                                               aTCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCca                                                                                                                                                                              >  7:196632/1‑149 (MQ=255)
                                                                                                                                                                               aTCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCca                                                                                                                                                                              >  7:1370227/1‑149 (MQ=255)
                                                                                                                                                                                   aCAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACaaa                                                                                                                                                                          >  8:75540/1‑149 (MQ=255)
                                                                                                                                                                                   aCAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACaaa                                                                                                                                                                          <  7:1270177/149‑1 (MQ=255)
                                                                                                                                                                                    cAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAAc                                                                                                                                                                         <  7:1049932/149‑1 (MQ=255)
                                                                                                                                                                                      aTGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAg                                                                                                                                                                       <  8:1370227/149‑1 (MQ=255)
                                                                                                                                                                                       tGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCca                                                                                                                                                                              >  8:459143/1‑141 (MQ=255)
                                                                                                                                                                                       tGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAgg                                                                                                                                                                      <  6:192238/149‑1 (MQ=255)
                                                                                                                                                                                         tCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtc                                                                                                                                                                                                              >  5:256685‑M1/1‑51 (MQ=255)
                                                                                                                                                                                         tCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtc                                                                                                                                                                                                              <  6:256685‑M1/108‑58 (MQ=255)
                                                                                                                                                                                         tCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTa                                                                                                                                                                    <  6:1163847/149‑1 (MQ=255)
                                                                                                                                                                                          cTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAg                                                                                                                                                                   <  5:678514/149‑1 (MQ=255)
                                                                                                                                                                                           tttCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGt                                                                                                                                                                  >  6:503588/1‑149 (MQ=255)
                                                                                                                                                                                            ttCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACCTCTGGGTCAAATTCCACAAACAGGTAGtt                                                                                                                                                                 <  6:95742/149‑1 (MQ=255)
                                                                                                                                                                                              cGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTgg                                                                                                                                                               <  7:311790/149‑1 (MQ=255)
                                                                                                                                                                                                          cGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCt                                                                                                                                                   >  6:1293779/1‑149 (MQ=255)
                                                                                                                                                                                                           gATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGACTCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGTCTCACTGACTGCAGTAAGTTTTCCCCGACCGATTTTTTCCAGGGTGATCATCGGTGACCGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCCCGTTCAAGGTGCCCGCGCTTGCAGTACAGTaa                    >  4:99208/1‑275 (MQ=255)
                                                                                                                                                                                                           gATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgca                                                                                                                        >  4:370812/1‑175 (MQ=255)
                                                                                                                                                                                                               gCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCAACGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCCCGTTGAAGTTGCCCGCCCTTGCAGTCAAGTaaaacc                >  4:300723/1‑272 (MQ=255)
                                                                                                                                                                                                                cTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTTTCTTTCGAGGCGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTGctg                            >  2:136266/1‑260 (MQ=255)
                                                                                                                                                                                                                cTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCcggcgt                                 >  4:204289/1‑253 (MQ=255)
                                                                                                                                                                                                                 tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAAt                                                                                                                                                       >  7:236885/1‑138 (MQ=255)
                                                                                                                                                                                                                 tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAAt                                                                                                                                                       <  8:236885/138‑1 (MQ=255)
                                                                                                                                                                                                                 tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactgac                                                                                                                                            <  8:582920/149‑1 (MQ=255)
                                                                                                                                                                                                                 tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactgac                                                                                                                                            <  6:76052/149‑1 (MQ=255)
                                                                                                                                                                                                                   atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTTATAGTCGTGGTCTGAATCACTTCTGGCTCAAATTCCACAAACAGGAAGTTGGGGAACAATGACTCactgactg                                                                                                                                          >  5:506288/1‑149 (MQ=255)
                                                                                                                                                                                                                   atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTg                                                                                                                                                                                          <  7:1188686/101‑1 (MQ=255)
                                                                                                                                                                                                                   atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTg                               >  4:333808/1‑256 (MQ=255)
                                                                                                                                                                                                                     gaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCa                                                                                                                                        <  7:775502/149‑1 (MQ=255)
                                                                                                                                                                                                                       aTAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGt                                                                                                                                      >  6:703241/1‑149 (MQ=255)
                                                                                                                                                                                                                        tAACCGCCGATGGGACTATCGCTGGCTACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                                                                                     <  6:399196/149‑1 (MQ=255)
                                                                                                                                                                                                                        tAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                                                                                     >  8:1195263/1‑149 (MQ=255)
                                                                                                                                                                                                                        tAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                                                                                     >  5:790013/1‑149 (MQ=255)
                                                                                                                                                                                                                         aaCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAgg                                                                                                                                                                      >  8:875031/1‑115 (MQ=255)
                                                                                                                                                                                                                          aCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTggg                                                      >  2:117304/1‑226 (MQ=255)
                                                                                                                                                                                                                               cgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTc                                                                                                                              <  7:527384/149‑1 (MQ=255)
                                                                                                                                                                                                                               cgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTc                                                                                                                              <  6:647890/149‑1 (MQ=255)
                                                                                                                                                                                                                                 aTGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACCGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCca                                                                                                                            >  5:473799/1‑149 (MQ=255)
                                                                                                                                                                                                                                     gACTATCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtga                                                                                                                         <  8:478826‑M1/149‑143 (MQ=255)
                                                                                                                                                                                                                                     gACTATCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtga                                                                                                                         >  7:1118696‑M1/1‑7 (MQ=255)
                                                                                                                                                                                                                                     gACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCa                                                                                                                                                                                                >  5:557032/1‑77 (MQ=255)
                                                                                                                                                                                                                                     gACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgca                                                                                                                        >  7:938909/1‑149 (MQ=255)
                                                                                                                                                                                                                                      aCTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACATACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgcac                                                                                                                       >  8:1235805/1‑149 (MQ=255)
                                                                                                                                                                                                                                      aCTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgcac                                                                                                                       >  8:380411/1‑149 (MQ=255)
                                                                                                                                                                                                                                       cTATCaacgcgacccgcggtgtcagccacttctttcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgagccggcaaccccttatccgggtgataaggtgatt                                                                                                                       <  8:1221318‑M1/149‑145 (MQ=255)
                                                                                                                                                                                                                                        tATCGCTGGCGACACGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGa                                                                                                                     >  8:478827/1‑149 (MQ=255)
                                                                                                                                                                                                                                         aTCaccgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtgattat                                                                                                                     <  7:1449757‑M1/149‑147 (MQ=255)
                                                                                                                                                                                                                                          tCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtgattatt                                                                                                                    >  7:697261‑M1/1‑2 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                     
CGTTTTAGAGTTTGCGGAACTCGGTATTCTTCACACTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACG‑AAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTGCAGTACAGTAAATACCAGGATTGCATAAT  >  NC_000913/4024329‑4024824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.