New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 66642141 (0.870)9 (0.060) 8/248 NT 9.1% noncoding (78/248 nt) REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 2304955 = 46 (0.300)noncoding (539/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

Only 100 of 174 total aligned reads displayed.

GTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAA  >  NC_000913/66494‑66789
                                                                                                                                                     |                                                                                                                                                   
 tgtTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATGCGACGC‑TGGCGCGTCTTATCAGGCc                                                                                                                                                    <  2:923761‑M1/149‑2 (MQ=255)
   ttttGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGtt                                                                                                                                                  <  1:836287/149‑1 (MQ=255)
   ttttGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGtt                                                                                                                                                  >  4:327850/1‑149 (MQ=255)
   ttttGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGtt                                                                                                                                                  >  1:722827/1‑149 (MQ=255)
   ttttGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGtt                                                                                                                                                  >  1:1266716/1‑149 (MQ=255)
     ttGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGa                                                                                                                                                <  2:173148/149‑1 (MQ=255)
       ggCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAAt                                                                                                                                              >  2:744218/1‑149 (MQ=255)
        gCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATg                                                                                                                                             >  1:618305/1‑149 (MQ=255)
         cAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATGCGACGCTGGC‑GCGTCTTATCAGGCctacacgct                                                                                                                                            <  2:596913‑M1/149‑10 (MQ=255)
             gcCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGa                                                                                                                                        >  4:849654/1‑149 (MQ=255)
             gcCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGa                                                                                                                                        <  3:699185/149‑1 (MQ=255)
                      gCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTg                                                                                                                               <  3:20764/149‑1 (MQ=255)
                            aaTACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCTGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATc                                                                                                                         >  2:1310361/1‑149 (MQ=255)
                            aaTACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATc                                                                                                                         >  1:891040/1‑149 (MQ=255)
                            aaTACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATc                                                                                                                         >  3:969703/1‑149 (MQ=255)
                                ccTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGc                                                                                                                     <  1:1475812/149‑1 (MQ=255)
                                 cTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGcc                                                                                                                    >  2:966184/1‑149 (MQ=255)
                                   ggCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGa                                                                                                                                        >  4:1200596/1‑127 (MQ=255)
                                      gTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGc                                                                                                                     <  1:1186897/143‑1 (MQ=255)
                                       tttGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGcc                                                                                                                                           >  3:736234/1‑120 (MQ=255)
                                        ttGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACaaaa                                                                                                             <  4:1288041/149‑1 (MQ=255)
                                             aTCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCa                                                                                                        <  4:527802/149‑1 (MQ=255)
                                             aTCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCa                                                                                                        >  4:1375128/1‑149 (MQ=255)
                                             aTCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCa                                                                                                        <  1:969761/149‑1 (MQ=255)
                                             aTCTTCTAACATGTCGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCGTGATAAGACGC‑GCCAGCATCGCATCAGGCGTTGAATGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCa                                                                                                        <  3:903935/149‑1 (MQ=255)
                                                ttctAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTTTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGACGTTGAATGCCGGATGCGCTTTCCTTATCCGGTCTACAAACTcgccgca                                                                                                     >  2:282380/1‑148 (MQ=17)
                                                ttctAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAgcg                                                                                                     >  4:923752/1‑149 (MQ=255)
                                                    aaCATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTa                                                                                                 <  3:327850/149‑1 (MQ=255)
                                                    aaCATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTa                                                                                                 <  3:1175902/149‑1 (MQ=255)
                                                    aaCATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTa                                                                                                 <  2:38661/149‑1 (MQ=255)
                                                     aCATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAg                                                                                                >  3:1128017/1‑149 (MQ=255)
                                                     aCATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAg                                                                                                >  2:782644/1‑149 (MQ=255)
                                                        tGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGcc                                                                                             <  1:273058/149‑1 (MQ=255)
                                                         gTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCt                                                                                            <  4:1067053/149‑1 (MQ=255)
                                                           tGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGa                                                                                          <  3:283585/149‑1 (MQ=255)
                                                            gACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAAt                                                                                                                                              <  3:1370659/96‑1 (MQ=255)
                                                            gACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAAt                                                                                                                                              >  4:1370659/1‑96 (MQ=255)
                                                                ccTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGa                                                                                     <  1:1376681/149‑1 (MQ=255)
                                                                ccTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGa                                                                                     <  4:818827/149‑1 (MQ=255)
                                                                  ttCGTGCCGGATGCGATTTGCTTATCCGGCTTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCACATCAGGCGTTGAAAGTCGGATGCGCTTTGCTTATCC‑GCCTACACAACCGCAGCGCGTAGGCTTGATAAGAcgc                                                                                  >  4:902870/1‑149 (MQ=14)
                                                                            aTGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTc                                                                         <  4:965854/149‑1 (MQ=40)
                                                                              gcgcTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGc                                                                       <  3:1250591/149‑1 (MQ=39)
                                                                                gcTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCAt                                                                     >  2:301874/1‑149 (MQ=40)
                                                                                 cTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGt                                                                                                                                                   >  1:1429417/1‑70 (MQ=37)
                                                                                 cTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCa                                                                              <  4:703877/139‑1 (MQ=40)
                                                                                  tttGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGAcgc                                                                                  >  1:1020524/1‑134 (MQ=37)
                                                                                     gCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGc                                                                <  1:1126333/149‑1 (MQ=255)
                                                                                      cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCg                                                               >  2:133936/1‑149 (MQ=40)
                                                                                      cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCg                                                               >  4:714601/1‑149 (MQ=39)
                                                                                       ttATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGt                                                              >  1:207114/1‑149 (MQ=255)
                                                                                       ttATCCGGCCCACAAAATCGCAGCGTGTAGGCCTGATAAGAGGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGt                                                              <  2:659522/149‑1 (MQ=255)
                                                                                         aTCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTg                                                            >  2:620746/1‑149 (MQ=40)
                                                                                            cGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAAt                                                         >  2:584655/1‑149 (MQ=255)
                                                                                            cGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAAt                                                         <  4:283917/149‑1 (MQ=255)
                                                                                            cGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAAt                                                         >  2:1476877/1‑149 (MQ=255)
                                                                                             ggCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATg                                                        >  2:1067759/1‑149 (MQ=255)
                                                                                               ccTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCACCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGcc                                                      <  2:999967/149‑1 (MQ=255)
                                                                                                 tACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTc                                                                         >  3:529768/1‑128 (MQ=255)
                                                                                                   cAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGAt                                                  <  4:500537/149‑1 (MQ=255)
                                                                                                    aaaaTCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATg                                                 <  3:898423/149‑1 (MQ=255)
                                                                                                    aaaaTCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATAAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGCCGCATCAGGCGTTGAATGCCGGATg                                                 >  4:897388/1‑149 (MQ=255)
                                                                                                        tCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATgcgcg                                             >  2:1034805/1‑148 (MQ=255)
                                                                                                        tCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCt                                             >  4:397580/1‑149 (MQ=255)
                                                                                                          gCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGTTGCGCttt                                           >  4:687374/1‑149 (MQ=255)
                                                                                                            agtgtgtAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTCGc                                         <  3:1288325/146‑1 (MQ=255)
                                                                                                            aGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGc                                         <  1:1310361/149‑1 (MQ=255)
                                                                                                              cGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCtt                                       <  4:738384/149‑1 (MQ=255)
                                                                                                                         gATAAGACGC‑GCCAGCGTCTTATCAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcgg                                                                                                        >  2:285776‑M1/1‑28 (MQ=255)
                                                                                                                         gATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCGTTGCTTATCCGGCCTAc                            >  2:655287/1‑149 (MQ=255)
                                                                                                                          aTAAGACGC‑GCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccaa                                                                                         >  2:1267766‑M1/1‑27 (MQ=255)
                                                                                                                            aaGACGC‑GCCAGCGTCTTATCAGGCctacaccgctgtgaagtgctccaccccgta                                                                                                                       <  1:828175‑M1/55‑31 (MQ=255)
                                                                                                                            aaGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGAt                                                                                         <  4:770433/85‑1 (MQ=38)
                                                                                                                            aaGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACaaa                         >  3:1386305/1‑149 (MQ=255)
                                                                                                                             aGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACaaaa                        >  2:852781/1‑149 (MQ=255)
                                                                                                                             aGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACaaaa                        <  1:149449/149‑1 (MQ=255)
                                                                                                                              gACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAt                       >  1:471449/1‑149 (MQ=255)
                                                                                                                               aCGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATc                      <  4:167136/149‑1 (MQ=255)
                                                                                                                               aCGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATc                      <  2:1406807/149‑1 (MQ=255)
                                                                                                                                 gc‑gcCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATg                                                 >  1:1044975/1‑120 (MQ=255)
                                                                                                                                 gc‑gcCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGc                    <  4:791419/149‑1 (MQ=255)
                                                                                                                                  c‑gcCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGGTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCa                   <  2:1322353/149‑1 (MQ=255)
                                                                                                                                  c‑gcCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCa                   <  1:510455/149‑1 (MQ=255)
                                                                                                                                     ccAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGc                 <  2:78510/149‑1 (MQ=255)
                                                                                                                                          gTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTa            <  2:1205865/149‑1 (MQ=255)
                                                                                                                                          gTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTa            <  3:1050004/149‑1 (MQ=255)
                                                                                                                                           tCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAg           <  4:1058121/149‑1 (MQ=255)
                                                                                                                                            cGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAgg          <  2:221706/149‑1 (MQ=255)
                                                                                                                                             gCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGc         <  1:727990/149‑1 (MQ=255)
                                                                                                                                               ctcAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccaacatctaacgcccgagccggttgcctgatgcgacgctggcgcgtcttatcagcatacgccacatccggcatggtatgccggat       <  2:1458474‑M1/148‑143 (MQ=255)
                                                                                                                                               aTCAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccaacatctaacgcccgagccggttgcctgatgcgacgctggcgcgtcttatcagcatacgccacatccggcatggtatgccggat       <  1:1411128‑M1/149‑143 (MQ=255)
                                                                                                                                               aTCAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccaacatctaacgcccgagccggttgcctgatgcgacgctggcgcgtcttatcagcatacgccacatccggcataccatgccggat       <  1:524918‑M1/149‑143 (MQ=255)
                                                                                                                                               aTCAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccaacatctaacgcccgagccggttgcctgatgcgacgctggcgcgtcttatcagcatacgccacatccggcataccatgccggat       <  1:1303299‑M1/149‑143 (MQ=255)
                                                                                                                                               aTCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCa       >  1:1339820/1‑149 (MQ=255)
                                                                                                                                                 cAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccaacatctaacgcccgagccggttgcctgatgcgacgctggcgcgtcttatcagcatacgccacatccggcataccatgccggatgt     <  1:1220381‑M1/149‑145 (MQ=255)
                                                                                                                                                  aGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGAt    <  1:292632/149‑1 (MQ=255)
                                                                                                                                                   ggCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccaacatctaacgcccgagccggttgcctgatgcgacgctggcgcgtcttatcagcatacgccacatccggcataccatgccggatgtgg   <  2:49143‑M1/149‑147 (MQ=255)
                                                                                                                                                    gCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGcc                                                                               <  1:1049470/72‑1 (MQ=255)
                                                                                                                                                    gCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGcc                                                                               >  2:1049470/1‑72 (MQ=255)
                                                                                                                                                    gCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATaa  >  2:880497/1‑149 (MQ=255)
                                                                                                                                                    gCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATaa  >  1:695140/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
GTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGC‑GCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAA  >  NC_000913/66494‑66789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.