| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 940,751 | T→C | 8.3% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 940,751 | 0 | T | C | 8.3% | 672.2 / 37.1 | 217 | intergenic (+31/‑208) | serS/dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| Reads supporting (aligned to +/- strand): ref base T (105/94); new base C (7/11); total (112/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.44e-01 | |||||||||||
Only 100 of 218 total aligned reads displayed.
TCTGGCTGTTGGTCGTACGCTGGTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAACTGCTATAG > NC_000913/940603‑940896 | tctggCTGTTGGTCGTACGCTGGTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCt > 2:522422/1‑149 (MQ=255) cGTACGCTGGTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCCGCAGGCGC‑ttttt < 1:1019498/149‑1 (MQ=255) cGTACGCTGGTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCCGCAGGCGC‑ttttt < 4:38411/149‑1 (MQ=255) gTACGCTGGTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGgcgc < 4:477810/143‑1 (MQ=255) gTACGCTGGTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGgcgc > 3:477810/1‑143 (MQ=255) gTACGCTGGTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCCGCAGGCGC‑ttttta < 2:112451/149‑2 (MQ=255) ggTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTcc < 3:201702/149‑1 (MQ=255) gTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTccc > 1:541654/1‑149 (MQ=255) ttGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCt > 4:186127/1‑149 (MQ=255) gCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTCCGGGCGC‑TTTTTTTGTCTCTCttt < 1:1459936/149‑1 (MQ=255) aTGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATAcc > 3:1399209/1‑149 (MQ=255) tGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTATTACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCg < 4:199717/149‑1 (MQ=255) gAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑ttttta > 1:755122/1‑128 (MQ=255) gAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGaa > 2:424619/1‑149 (MQ=255) gAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGaa > 4:874604/1‑149 (MQ=255) gAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGaa < 1:935019/149‑1 (MQ=255) aaaaCTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAAc > 2:445262/1‑149 (MQ=255) aaaCTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACa > 4:1223820/1‑149 (MQ=255) tATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGTCTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCCGCAGGCCC‑tttt < 4:1438012/121‑1 (MQ=255) tATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACaataa > 1:1239804/1‑149 (MQ=255) aTCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACaataat < 2:951333/149‑1 (MQ=255) tCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAAtt < 2:700587/149‑1 (MQ=255) gcagGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTAct > 3:30968/1‑149 (MQ=255) agGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTActcc > 2:1442696/1‑149 (MQ=255) tGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCAc > 2:203616/1‑149 (MQ=255) tCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTacac > 4:662464/1‑149 (MQ=255) tCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCCGCAGGCGC‑tttttaga < 2:725209/108‑4 (MQ=39) gcGTCTTGAAATACCAGAAGTTCTGCGGCCGCTTATTCAGGGGGTGGAATATATTGGCGATTACCCAATTTTTGTGAGTCTAAAAAGCGCCTGCGGGCGG‑TTTTTTTGTCTTCCTTTGATACCGAAAAATGATTGCTGCTCACTTacaa > 2:405206/2‑148 (MQ=255) aTTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTaa < 2:896132/149‑1 (MQ=255) aTTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTaa < 4:30968/149‑1 (MQ=255) aTTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTaa < 2:1352320/149‑1 (MQ=255) aaGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCttt < 3:631858/109‑1 (MQ=255) aGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAAtacta > 2:271277/1‑149 (MQ=255) gTACCAGAAGTTCTGCGTCCGTATATGAACGGGCTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATTCCTAACAATAATTACCCCTCACTTGCACGTAAtactac < 4:1399209/149‑1 (MQ=255) gTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAAtactac < 4:1281167/149‑1 (MQ=255) gTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAAtactac < 4:602406/149‑1 (MQ=255) tACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATactact < 3:1222868/149‑1 (MQ=255) ccAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACttt > 3:1254260/1‑149 (MQ=255) aGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCg > 2:1359803/1‑149 (MQ=255) aGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCg > 2:1375480/1‑149 (MQ=255) gAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGa < 3:387067/149‑1 (MQ=255) gAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGa < 3:634141/149‑1 (MQ=255) gAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGa > 1:378693/1‑149 (MQ=255) gAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGa < 4:967700/149‑1 (MQ=255) gAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGa > 2:1614099/1‑149 (MQ=255) aGTTCTGCGTTCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGt < 1:261516/149‑1 (MQ=255) ttCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGa > 1:680797/1‑149 (MQ=255) ccGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTAc < 1:807132/149‑1 (MQ=255) ccGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTAc < 3:167192/149‑1 (MQ=255) tataTGAACGGACTGGAATATATTGGCTAATACTCAATTTTTCTGATTCTAAAAAGAGCCTGCGGGCGC‑TTTTTTTTTCTCCCTTTGATACCGAACTATAATTACTCCTCCCTTACACGTAATACTAATTTCGAGTGTAAATCTACCTa > 1:904871/1‑149 (MQ=255) gAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATctct > 3:1316445/1‑149 (MQ=255) gAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATctct > 3:806360/1‑149 (MQ=255) aCGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCttt < 4:1316445/149‑1 (MQ=255) aCTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACGCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTTCCTATCTCTTTGAtt < 1:343718/149‑1 (MQ=255) tGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGAtttt > 4:751559/1‑149 (MQ=255) gAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTGCGAGTGAAAATCTACCTATCTCTTTGATTTTCa > 4:1483802/1‑149 (MQ=255) atatatTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCaaa > 1:1121968/1‑149 (MQ=255) atatatTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCaaa < 1:1359803/149‑1 (MQ=255) atTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAattat < 4:1525991/149‑1 (MQ=255) atTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAattat < 1:162141/149‑1 (MQ=255) tGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTc < 1:292718/149‑1 (MQ=255) tGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTc < 2:1105718/149‑1 (MQ=255) tGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGAAACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTGGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTc < 1:498545/149‑1 (MQ=255) ggCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCttt < 2:643/132‑1 (MQ=255) tAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCtt > 2:1647588/1‑58 (MQ=255) tAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGa < 2:1173827/107‑1 (MQ=255) tAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGa > 1:1173827/1‑107 (MQ=255) aTACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGta > 4:40055/1‑149 (MQ=255) tACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGtat < 3:1483802/149‑1 (MQ=255) tACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGtat < 4:349834/149‑1 (MQ=255) ccAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGaa > 2:845668/1‑62 (MQ=255) ccAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGaa < 1:845668/62‑1 (MQ=255) ccAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCaaa > 1:607643/1‑133 (MQ=255) ccAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGa < 1:1431435/141‑1 (MQ=255) ccAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACa > 2:234830/1‑149 (MQ=255) ccAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACa > 2:1663220/1‑149 (MQ=255) ccAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACa > 4:644566/1‑149 (MQ=255) cAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGCTTTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTc > 1:1528185/1‑130 (MQ=255) cAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGCTTTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTc < 2:1528185/130‑1 (MQ=255) ttCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCtat > 1:197670/1‑149 (MQ=255) ttCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCtat > 3:265326/1‑149 (MQ=255) tCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCtata < 3:375397/149‑1 (MQ=255) cTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCtatat > 2:412504/1‑149 (MQ=255) tGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCtatata > 3:1478951/1‑149 (MQ=255) tGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCtatata > 1:1413733/1‑149 (MQ=255) tGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCCATGCATACAAGCCtatgat < 4:1468035/149‑4 (MQ=255) aaTCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACGGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCGACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCTTATATAGc > 4:1037659/1‑149 (MQ=255) tCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGa > 1:1293536/1‑149 (MQ=255) cTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGaa < 1:445262/149‑1 (MQ=255) aaaaaaaGCGCCCGCAGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGaa > 4:1499597/3‑149 (MQ=255) tAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTAc < 1:1609294/97‑1 (MQ=255) tAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAAc > 3:944808/1‑149 (MQ=255) tAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCCTTGATTTTCAAATTATTCGATGTATACAAGcc < 1:521830/137‑1 (MQ=255) aaaaaGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAACt > 2:1513920/1‑149 (MQ=255) aaaaaGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAACt > 3:1123181/1‑149 (MQ=255) aaaaGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCtatata > 2:1427010/1‑141 (MQ=255) aaaGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAACTGc > 3:978563/1‑149 (MQ=255) aaaGCGCCCGCAGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAACTGc > 4:1027286/1‑149 (MQ=255) aGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAACTGCta < 3:1046871/149‑1 (MQ=255) gcCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAACTGCTATAg < 2:1056549/149‑1 (MQ=255) | TCTGGCTGTTGGTCGTACGCTGGTTGCAGTAATGGAAAACTATCAGCAGGCTGATGGTCGTATTGAAGTACCAGAAGTTCTGCGTCCGTATATGAACGGACTGGAATATATTGGCTAATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGC‑TTTTTTTGTCTCCCTTTGATACCGAACAATAATTACTCCTCACTTACACGTAATACTACTTTCGAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAACTGCTATAG > NC_000913/940603‑940896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |