Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,620,220 A→G 5.0% intergenic (‑60/+26) uraA ← / ← upp uracil permease/uracil phosphoribosyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,620,2200AG 5.0% 459.3 / 9.6 139intergenic (‑60/+26)uraA/uppuracil permease/uracil phosphoribosyltransferase
Reads supporting (aligned to +/- strand):  ref base A (71/61);  new base G (3/4);  total (74/65)
Fisher's exact test for biased strand distribution p-value = 7.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.02e-01

Only 100 of 141 total aligned reads displayed.

TGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAG  >  NC_000913/2620079‑2620368
                                                                                                                                              |                                                                                                                                                     
tGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTTTAAG‑AGTCGGc                                                                                                                                               <  2:888689/149‑1 (MQ=255)
  gCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATTGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCtt                                                                                                                                             <  3:1175244/149‑1 (MQ=255)
  gCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTTTAAG‑AGTCGGCtt                                                                                                                                             <  4:1250729/149‑1 (MQ=255)
     aaCAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTTTAAG‑AGTCGGCttttt                                                                                                                                          <  2:810419/149‑3 (MQ=255)
      aCAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAat                                                                                                                                         <  4:1072569/149‑1 (MQ=255)
      aCAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAat                                                                                                                                         >  3:14663/1‑149 (MQ=255)
       cAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAatt                                                                                                                                        >  1:638638/1‑149 (MQ=255)
         aaTGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAattat                                                                                                                                      >  2:991802/1‑149 (MQ=255)
          aTGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAattatt                                                                                                                                     <  3:194820/149‑1 (MQ=255)
              tGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTa                                                                                                                                 <  2:249390/149‑1 (MQ=255)
                 aaaCTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTCTTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTc                                                                                                                                                  >  3:587532/1‑129 (MQ=255)
                 aaaCTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTc                                                                                                                                                  <  4:587532/129‑1 (MQ=255)
                  aaCTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCt                                                                                                                             <  3:527862/149‑1 (MQ=255)
                     tAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTa                                                                                                                          <  1:1285330/149‑1 (MQ=255)
                       aGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTAtt                                                                                                                        >  3:439690/1‑149 (MQ=255)
                            gATTGTCTGTAAAAGTGGCGGTTTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTa                                                                                                                   <  2:833374/149‑1 (MQ=255)
                            gATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTa                                                                                                                   >  1:1361756/1‑149 (MQ=255)
                                 tCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCaaa                                                                                                              >  2:173543/1‑149 (MQ=255)
                                    gTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTa                                                                                                                                 >  2:1477380/1‑127 (MQ=255)
                                     tAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGAtt                                                                                                          >  1:1430369/1‑149 (MQ=255)
                                      aaaaGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGAttt                                                                                                         <  1:107825/149‑1 (MQ=255)
                                        aaGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTg                                                                                                       >  2:785835/1‑149 (MQ=255)
                                          gTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTc                                                                                                     <  1:147513/149‑1 (MQ=255)
                                              cGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCg                                                                                                 >  2:1606659/1‑149 (MQ=255)
                                               ggTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCgg                                                                                                >  4:519389/1‑149 (MQ=255)
                                                gTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGc                                                                                               >  2:1028822/1‑149 (MQ=255)
                                                       actcacCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCgg                                                                                                                                                <  3:568704/93‑1 (MQ=255)
                                                       actcacCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCgg                                                                                                                                                >  4:568704/1‑93 (MQ=255)
                                                       actcacCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCg                                                                                        >  4:868019/1‑149 (MQ=255)
                                                        ctcacCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTTTAAG‑AGTCGGc                                                                                                                                               <  1:1447190/93‑1 (MQ=255)
                                                           acCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTa                                                                                                                   <  2:458671/118‑1 (MQ=255)
                                                           acCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTa                                                                                                                   >  1:458671/1‑118 (MQ=255)
                                                           acCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGc                                                                                    >  3:1677450/1‑149 (MQ=255)
                                                             cccGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGccc                                                                                  >  3:1366127/1‑149 (MQ=255)
                                                              ccGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCg                                                                                 <  3:348214/149‑1 (MQ=255)
                                                               cGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCg                                                                                 <  2:1696809/149‑1 (MQ=255)
                                                                gATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCgca                                                                               <  2:1366314/149‑3 (MQ=255)
                                                                    gCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGaataa                                                                           <  4:882748/149‑1 (MQ=255)
                                                                     cACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGaataat                                                                          <  1:1685933/149‑1 (MQ=255)
                                                                        ggCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATc                                                                                            <  1:941899/128‑1 (MQ=255)
                                                                         gcgcGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTAt                                                                      <  1:785835/149‑1 (MQ=255)
                                                                           gcgTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTAt                                                                                                                                <  3:1289529/89‑1 (MQ=255)
                                                                           gcgTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATcc                                                                    <  2:632738/149‑1 (MQ=255)
                                                                             gTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGt                                                                  >  4:678978/1‑149 (MQ=255)
                                                                                        atCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGt                                                       <  1:306096/149‑1 (MQ=255)
                                                                                         tCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTc                                                      >  2:271962/1‑149 (MQ=255)
                                                                                          ccTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTcc                                                     <  4:1366127/149‑1 (MQ=255)
                                                                                           ctctGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTccc                                                    >  3:859701/1‑149 (MQ=255)
                                                                                           ctctGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTccc                                                    >  1:1544103/1‑149 (MQ=255)
                                                                                           ctctGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCAGGAATAATGTATCCGTGCTCGTTCAGTccc                                                    >  4:1315620/1‑149 (MQ=255)
                                                                                            tctGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTTA‑AGTCGGCTTTAATTATTTTTATTCTTTATCTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCt                                                   >  4:1660563/1‑149 (MQ=255)
                                                                                            tctGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCt                                                   >  1:202823/1‑149 (MQ=255)
                                                                                            tctGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCt                                                   <  2:897774/149‑1 (MQ=255)
                                                                                            tctGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCt                                                   >  1:1078349/1‑149 (MQ=255)
                                                                                            tctGTATTATGCGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCt                                                   >  1:897774/1‑149 (MQ=255)
                                                                                             ctGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCGTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTg                                                  >  3:964549/1‑149 (MQ=255)
                                                                                              tGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGa                                                 <  4:354924/149‑1 (MQ=255)
                                                                                              tGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGa                                                 <  1:465791/149‑1 (MQ=255)
                                                                                              tGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGa                                                 <  3:1299244/149‑1 (MQ=255)
                                                                                               gTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGaataat                                                                          >  2:1503133/1‑123 (MQ=255)
                                                                                               gTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGaataat                                                                          <  1:1503133/123‑1 (MQ=255)
                                                                                                tattatGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCa                                                         <  3:378570/139‑1 (MQ=255)
                                                                                                      gtgtTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCa                                                         >  3:1688772/1‑133 (MQ=255)
                                                                                                         ttATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAGGATTTTGTCACCGGCATCGCCGATGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCAATGc                                      >  3:283589/1‑149 (MQ=255)
                                                                                                         ttATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGc                                      <  1:991802/149‑1 (MQ=255)
                                                                                                         ttATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGc                                      <  4:1015052/149‑1 (MQ=255)
                                                                                                         ttATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGc                                      >  3:48296/1‑149 (MQ=255)
                                                                                                         ttATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGc                                      <  4:439690/149‑1 (MQ=255)
                                                                                                             aGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGta                                  >  3:574986/1‑149 (MQ=255)
                                                                                                             aGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGta                                  >  4:1002139/1‑149 (MQ=255)
                                                                                                              ggCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGtat                                 >  2:1206402/1‑149 (MQ=255)
                                                                                                              ggCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGtat                                 >  2:445229/1‑149 (MQ=255)
                                                                                                               gcgcTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGtata                                <  1:418137/149‑1 (MQ=255)
                                                                                                               gcgcTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTGATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGtata                                <  2:352074/149‑1 (MQ=255)
                                                                                                                     tACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTc                          <  1:1206402/149‑1 (MQ=255)
                                                                                                                        tC‑AAAAAAAAGCCGGCTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGt                                                                        <  1:1282821/100‑1 (MQ=255)
                                                                                                                        tC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTTACCGGCATCGCCGAGGCCCGGAATAATGt                                                                        >  2:1282821/1‑100 (MQ=255)
                                                                                                                        tC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGaataat                                                                          <  3:1573022/98‑1 (MQ=255)
                                                                                                                        tC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGaataat                                                                          >  4:1573022/1‑98 (MQ=255)
                                                                                                                        tC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGAc                       >  1:1038588/1‑149 (MQ=255)
                                                                                                                           taattaaaGCCGACTTTAAG‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGt                     >  3:882706/6‑149 (MQ=255)
                                                                                                                           aaaaaaaaGCCGGCTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGt                     >  4:1210946/1‑149 (MQ=255)
                                                                                                                           aaaaaaaaGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCt                                                   >  1:1174901/1‑119 (MQ=255)
                                                                                                                           aaaaaaaaGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCt                                                   <  2:1174901/119‑1 (MQ=255)
                                                                                                                           aaaaaaaaGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGt                     >  4:690250/1‑149 (MQ=255)
                                                                                                                           aaaaaaaaGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGt                     >  1:1165464/1‑149 (MQ=255)
                                                                                                                           aaaaaaaaGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGt                     >  2:1173673/1‑149 (MQ=255)
                                                                                                                           aaaaaaaaGCCGACTCTTAA‑AGGCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGt                     >  1:789188/1‑149 (MQ=255)
                                                                                                                            aaaaaaaGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTc                    >  3:555047/1‑149 (MQ=255)
                                                                                                                               taaaGCCGACTTTAAG‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCgg                 >  4:1340660/2‑149 (MQ=255)
                                                                                                                                aaaGCCGACT‑TTAAGAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCggg                >  2:426371/1‑149 (MQ=255)
                                                                                                                                 aaGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCAGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGt               <  4:1168190/149‑1 (MQ=255)
                                                                                                                                      gACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTcc                   <  3:1069228/140‑1 (MQ=255)
                                                                                                                                      gACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCt          >  1:834946/1‑149 (MQ=255)
                                                                                                                                         tctTAA‑AGTCGGCTTTAATTCTTCTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCtttt       <  3:1200181/149‑1 (MQ=255)
                                                                                                                                         tctTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGATGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCACTGATCAACCAATGCGGTCTACAGTTCGACGTCCGGGTGCGCtttt       >  4:602123/1‑149 (MQ=255)
                                                                                                                                           ttAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGc                                      >  4:214161/1‑116 (MQ=255)
                                                                                                                                           ttAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTc     <  4:249173/149‑1 (MQ=255)
                                                                                                                                            tAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTcc    <  1:1626193/149‑1 (MQ=255)
                                                                                                                                              a‑aGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCcag  >  1:1310654/1‑149 (MQ=255)
                                                                                                                                              |                                                                                                                                                     
TGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTCTTTCACTCACCCCGATAGCACGGCGCGTCATAGTATTATCCTCTGTATTATGTGTTATAGGCGCTTTACTC‑AAAAAAAAGCCGACTCTTAA‑AGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAG  >  NC_000913/2620079‑2620368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑