| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,918,022 | A→G | 6.2% | intergenic (+209/+23) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,918,022 | 0 | A | G | 6.2% | 715.9 / 20.5 | 219 | intergenic (+209/+23) | barA/gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| Reads supporting (aligned to +/- strand): ref base A (101/104); new base G (5/9); total (106/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.05e-01 | |||||||||||
Only 100 of 224 total aligned reads displayed.
TGCTGGAACTGTTGGACGAGATGGATAATGTCGCGCGCGAAGCCAGCAAAATTCTCGGGTAATGGATGTCTTGTCGAGTAGCAATCGGCTTTTTATGACGCTGGTTTCAGATTGGTGACAAAGTGCCTGTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTTCATCACTTGATCCATATCGATTTCTACACCCAGCCCCGGTTTTTCTGGCACCTGTACCAGCCCGCCTTTGATCTCAAACGGTTCTTTGGTCAGGCGCTGATTGCCTTCCTGCCAA > NC_000913/2917752‑2918276 | tgctgGAACTGTTGGACGAGATGGATAATGTCGCGCGCGAAGCCAGCAAAATTCTCGGGTAATGGATGTCTTGTCGAGTAGCAATCGGCTTTTTATGACGCTGGTTTCAGATTGGTGACAAAGTGCCTGTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATagag < 1:67032/274‑1 (MQ=255) aaTGTCGCGCGCGAAGCCAGCAAAATTCTCGGGTAATGGATGTCTTGTCGAGTAGCAATCGGCTTTTTATGACGCTGGTTTCAGATTGGTGACAAAGTGCCTGTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCa < 2:603473/275‑1 (MQ=255) aTGGGTTTCTTTTCGAGTAGCAATCGGCTTTTTATGACGCTGGTTTCAGATTGGTGGCAAAGTGCCTGTGGTTATGCCGGATGCGGCGTTAACGCCTTAGCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCGGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagcc < 4:118556/274‑1 (MQ=255) gTCGAGTGGCAATCGGATTTTTATGACGCTGGTTTCAGATTGGTGACAAGGTGCCTGTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTc < 2:305523/217‑1 (MQ=255) gggTAGAATTCGGCTTTTTATGAGCCTGGTTTCAGATTGGTGACAAAGTGCCTGTGTTTATGCCGGATTCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTg < 4:570207/273‑1 (MQ=255) ggTGACAAAGTGCC‑‑TGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTc > 2:326468/1‑275 (MQ=255) gCCTGTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATaga > 5:736300/1‑149 (MQ=255) gtgtTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCg > 7:1050490/1‑149 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGGCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCTATCTGGAGCCggtt < 6:470124/149‑1 (MQ=39) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGGTGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCTATCTGGAGCCggtt > 8:331108/1‑149 (MQ=38) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGGTACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggtt > 7:269644/1‑149 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCTATCTGGAGCCggtt < 6:96038/149‑1 (MQ=255) tttATGCCGGAGGCGGCGTTAGCGCCTTATCCAGCCTACAAAACCAATTAGATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggtt > 8:926038/1‑149 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCTATCTGGAGCCggttt < 7:331108/149‑1 (MQ=39) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggtttt > 7:678281/1‑149 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCTATCTGGAGCCggtttga < 5:70181/149‑3 (MQ=39) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggttttg < 8:439363/149‑1 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggtttcg < 6:770994/149‑3 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTGAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑TGACACGCTACAGATAGAGCCggttttgg > 8:169377/1‑149 (MQ=38) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggttttgg < 5:885392/149‑1 (MQ=255) ggCCGGATAAGGCGTTAACGCCGCATCCGACCTACAAAACCAATTAAATGCAATGACTCAAAAAATGATGTATACCTGATACATAGCACAAAAGGCTATTTTGCGATTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggctttgg > 8:1060468/2‑149 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggttttggt < 5:237631/149‑1 (MQ=255) cGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggttttggttt > 7:194663/1‑149 (MQ=255) ataaggcgTTAACGCCGCATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCt > 7:853303/5‑149 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCt > 8:848781/1‑148 (MQ=255) ggcgTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCt > 8:129397/1‑149 (MQ=255) gcgTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCggttttggttt > 4:716789/1‑141 (MQ=255) gcgTTAAAGCCTTATCCGGCCTACAAAACCAATTAAATTAAATGAATTAAAAAATGATTTAGACCGAGTTCATAGAACAACAGGCAATTTTGGGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGTGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACGGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGTTACAGCTCATGGGCTTTCATCACTTGAt < 4:447932/275‑1 (MQ=255) gTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTaa < 5:955943/149‑1 (MQ=255) gTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTaa < 5:584734/149‑1 (MQ=255) gTTAACGCCCTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGCTAGAGCCGGTTTTGGTTTTCTGTCTTat > 8:694439/1‑148 (MQ=255) tAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTg < 2:716789/141‑1 (MQ=255) gCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCAcc > 5:535253/1‑149 (MQ=255) ttATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCtt > 1:45266/1‑138 (MQ=255) cGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAAACCGGCTCTATCTGGAGCCggttt > 5:567037/1‑120 (MQ=255) ggCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACggg > 5:259805/1‑149 (MQ=255) cTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgcgc < 5:782763/149‑1 (MQ=255) aaaaCCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGt > 8:793497/1‑149 (MQ=255) aaTTAAATTCAATTAATTAAAAAAGGATGTAGACCTGACACATAGCACAACAGGCTTTTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGTTAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTTCATCACTTGATCCATATCGATTTCTACACCCAGCCCCGGtt < 4:326468/275‑1 (MQ=255) aTTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGc > 2:446508/1‑204 (MQ=255) ttAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAAc < 6:645477/149‑1 (MQ=255) ttAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAAc > 7:575957/1‑149 (MQ=255) ttCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTcca > 6:1048171/1‑149 (MQ=255) aaTGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGt > 4:197570/1‑106 (MQ=255) aaTGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTAt > 5:109203/1‑136 (MQ=255) aaTGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAAc > 7:454906/1‑141 (MQ=255) aaTGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAAc < 8:454906/141‑1 (MQ=255) aaTGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagcc > 6:895651/1‑149 (MQ=255) aaTGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagcc > 5:409561/1‑149 (MQ=255) gtttatcagagactgattTAGACCTGTNANATATCACAACAGGCTTTTTTGCGTTTCGCCTCAGTCTC‑AAACCGGNCCCAGATAGCGCCTGTTTTGGTTTTCTGTCGTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCCNCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTTCATCACTTGATCCATATCGATTTCTACACCCAGCCCCGGTTTTTCTGGCAc < 3:60845/261‑1 (MQ=255) aTGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagcca < 7:299992/149‑1 (MQ=255) tGAATTAAAAAATGATGTAGACCTGGTACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagccag < 8:269644/149‑1 (MQ=255) tGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagccag < 6:16599/149‑1 (MQ=255) aaTTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTa < 2:197570/106‑1 (MQ=255) ttAAAAAATGATGTAGACCCGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAAt < 8:400650/149‑1 (MQ=255) tAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATc < 8:655802/149‑1 (MQ=255) tAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATc < 6:507735/149‑1 (MQ=255) tAAAAAACGATGTAAACCTGATACATAGCACAACAGGCTATTTTGCGTTTATCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTAAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGaaac < 6:574793/149‑3 (MQ=255) aaTGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATa < 6:722742/149‑1 (MQ=255) tAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCAtt < 5:919801/149‑1 (MQ=255) gACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAAc > 7:827606/1‑120 (MQ=255) cTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCcat > 5:552384/1‑149 (MQ=255) cTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCcat > 6:702283/1‑149 (MQ=255) tGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCcatc < 6:409561/149‑1 (MQ=255) aTACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCcatcgc < 6:818036/149‑1 (MQ=255) aTACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTTCATCCCTTGATc > 1:192009/1‑209 (MQ=255) aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc > 6:586070/1‑92 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCcatcgcatc < 5:838945/149‑1 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCcatcgcatc < 5:357544/149‑1 (MQ=255) cATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCcatcgcatc < 7:140095/149‑1 (MQ=255) aTAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagcc < 2:687255/118‑1 (MQ=255) aGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTc < 8:218089/149‑1 (MQ=255) aacaGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATANTGCATTCCCATCGCATCGTCACCNCCGCNAAGCCCCTGTTTCTGATACAGCTCATTGGCTTTCCTCACTTGATCCataaccc > 4:653163/1‑202 (MQ=255) aacaGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCAcgcg > 6:942736/1‑149 (MQ=255) aacaGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCAcgcg > 6:634720/1‑149 (MQ=255) aacaGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCAcgcg > 5:1016099/1‑149 (MQ=255) aacaGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCAcgcg > 7:408000/1‑149 (MQ=255) aacaGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCt > 1:152238/1‑167 (MQ=255) acaGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTTCATCACTTGATCCATATCGATTTCTACACCCAGCCCCGGTTTTTCt < 2:100627/231‑1 (MQ=255) caGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTaa > 1:108848/1‑71 (MQ=255) gCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATGGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCa > 5:473763/1‑149 (MQ=255) cTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCa < 3:108848/71‑1 (MQ=255) aTTTTCCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGGGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTTCATCACTTGATCCATATCGATTTCTACACCCAGCCCCGGTTTTTCTGGCACCTGTACCAGCCCGCCTTTGATCTCAAACGGTTCTTTGGTCAGgcgc < 2:530188/275‑1 (MQ=255) ttAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTc < 5:406888/149‑1 (MQ=255) gCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGATTCTGa < 6:781582/149‑1 (MQ=255) aTCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATa > 7:126447/1‑149 (MQ=255) aGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTCATACAg < 6:535253/149‑1 (MQ=255) tctc‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCt > 6:143979/1‑149 (MQ=255) tc‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTccc > 5:714839/1‑104 (MQ=255) caaaaCCGGCTCTATCTGGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCa > 8:729819/3‑149 (MQ=255) aaaaCCGGCTCTATCTGGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGa > 7:445986/2‑139 (MQ=255) aaCCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATgg < 7:926038/149‑1 (MQ=255) aaCCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATgg > 8:881149/1‑149 (MQ=255) gCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACt > 3:174442/1‑88 (MQ=255) gCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCt > 4:206460/1‑147 (MQ=255) cTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTtc > 6:382354/1‑149 (MQ=255) cTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTtc < 5:677546/149‑1 (MQ=255) tCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTtca > 8:619481/1‑149 (MQ=255) tCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTtca > 7:105667/1‑149 (MQ=255) cAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTtca < 2:206460/147‑1 (MQ=255) | TGCTGGAACTGTTGGACGAGATGGATAATGTCGCGCGCGAAGCCAGCAAAATTCTCGGGTAATGGATGTCTTGTCGAGTAGCAATCGGCTTTTTATGACGCTGGTTTCAGATTGGTGACAAAGTGCCTGTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTC‑AAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACTGCATTCCCATCGCATCGTCACGCGCGCCAAGCCCGTGTTTCTGATACAGCTCATGGGCTTTCATCACTTGATCCATATCGATTTCTACACCCAGCCCCGGTTTTTCTGGCACCTGTACCAGCCCGCCTTTGATCTCAAACGGTTCTTTGGTCAGGCGCTGATTGCCTTCCTGCCAA > NC_000913/2917752‑2918276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |