Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,572,083:1 +G 5.2% intergenic (+168/‑331) yjiS → / → yjiT DUF1127 family protein/pseudogene

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,572,0831.G 5.2% 547.3 / 21.5 116intergenic (+168/‑331)yjiS/yjiTDUF1127 family protein/pseudogene
Reads supporting (aligned to +/- strand):  ref base . (56/54);  new base G (3/3);  total (59/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 124 total aligned reads displayed.

ATAATAAAACGTTTTTATGTTTTTAAATTAAGTTATAAAAATTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCA  >  NC_000913/4571936‑4572227
                                                                                                                                                    |                                                                                                                                                
       aaCGTTTTTATGTTTTTAAATTAAGTTATAAAAATTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑Tgtgt                                                                                                                                             >  4:968932/1‑146 (MQ=255)
       aaCGTTTTTATGTTTTTAAATTAAGTTATAAAAATTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑Tgtgt                                                                                                                                             <  3:968932/146‑1 (MQ=255)
            ttttATGTTTTTAAATTAAGTTATAAAAATTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTtgac                                                                                                                                     <  1:187757/149‑1 (MQ=255)
                    ttttAAATTAAGTTATAAAAATTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACACA‑AGTAATCACTGTGCGTTTTTtga                                                                                                                                      >  1:650847/1‑140 (MQ=38)
                    ttttAAATTAAGTTATAAAAATTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACACA‑AGTAATCACTGTGCGTTTTTtga                                                                                                                                      <  2:650847/140‑1 (MQ=38)
                                ttATAAAAATTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCatta                                                                                                                 >  4:486634/1‑149 (MQ=255)
                                   taAAAATTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTc                                                                                                              <  2:1628175/149‑1 (MQ=255)
                                     aaaaTTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTGTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTtga                                                                                                                                      >  4:1097914/1‑123 (MQ=255)
                                     aaaaTTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTtga                                                                                                                                      <  3:1097914/123‑1 (MQ=255)
                                       aaTTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACt‑t                                                                                                                                                 >  2:747727/1‑110 (MQ=255)
                                        aTTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGtttttt                                                                                                                                        >  1:1739753/1‑118 (MQ=255)
                                        aTTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGtttttt                                                                                                                                        <  2:1739753/118‑1 (MQ=255)
                                            tCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCattatt                                                                                                               >  2:208015/1‑139 (MQ=255)
                                            tCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCattatt                                                                                                               <  1:208015/139‑1 (MQ=255)
                                               cGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAActct                                                                                                                      >  4:1152132/1‑129 (MQ=255)
                                               cGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAActct                                                                                                                      <  3:1152132/129‑1 (MQ=255)
                                               cGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAg                                                                                                  >  4:1163740/1‑149 (MQ=255)
                                                gagaCAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTa                                                                                                                             >  1:1858024/1‑121 (MQ=255)
                                                gagaCAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTa                                                                                                                             <  2:1858024/121‑1 (MQ=255)
                                                gagaCAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCattat                                                                                                                >  2:531536/1‑134 (MQ=255)
                                                gagaCAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGt                                                                                                 >  1:787060/1‑149 (MQ=255)
                                                gagaCAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGt                                                                                                 >  2:1564810/1‑149 (MQ=255)
                                                   aCAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAAct                                                                                                                        <  1:682157/123‑1 (MQ=255)
                                                   aCAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAAct                                                                                                                        >  2:682157/1‑123 (MQ=255)
                                                     aaTTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCat                                                                                                                   >  3:1697032/1‑126 (MQ=255)
                                                     aaTTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCat                                                                                                                   <  4:1697032/126‑1 (MQ=255)
                                                     aaTTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCat                                                                                                                   <  2:227018/126‑1 (MQ=255)
                                                     aaTTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCat                                                                                                                   >  1:227018/1‑126 (MQ=255)
                                                        tcatcaATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTaa                                                                                         <  3:486634/149‑1 (MQ=255)
                                                          atcaATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTtgac                                                                                                                                     >  2:1471384/1‑103 (MQ=255)
                                                           tcaATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGttttt                                                                                                                                         <  2:276638/98‑1 (MQ=255)
                                                           tcaATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGttttt                                                                                                                                         >  1:276638/1‑98 (MQ=255)
                                                              aTAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGc                                                                                                    >  1:1686514/1‑132 (MQ=255)
                                                              aTAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGc                                                                                                    <  2:1686514/132‑1 (MQ=255)
                                                              aTAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGttt                                                                                   <  2:787060/149‑1 (MQ=255)
                                                                       gAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACt‑t                                                                                                                                                 >  2:88847/1‑78 (MQ=255)
                                                                        aGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTgg                                                                         >  1:1503112/1‑149 (MQ=255)
                                                                            tACAGGAATATCTTCTTCACTATCCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAg                                                                     <  3:1163740/149‑1 (MQ=255)
                                                                             aCAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGttt                                                                                               >  1:257851/1‑122 (MQ=255)
                                                                                ggAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTaa                                                                 <  1:1564810/149‑1 (MQ=255)
                                                                                 gAATATCTTCTTCACTAACCTCTTTAAACTTATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGGTATTGTGCAGTTtc                                                                                              >  4:12623/1‑119 (MQ=255)
                                                                                 gAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTtc                                                                                              <  3:12623/119‑1 (MQ=255)
                                                                                 gAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTg                                                                          >  3:1546566/1‑139 (MQ=255)
                                                                                 gAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTg                                                                          <  4:1546566/139‑1 (MQ=255)
                                                                                 gAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTaaa                                                                >  1:1806470/1‑149 (MQ=255)
                                                                                 gAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTaaa                                                                >  3:558636/1‑149 (MQ=255)
                                                                                   atatCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAActct                                                                                                                      <  1:1578642/93‑1 (MQ=255)
                                                                                     atCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTc                                                            >  2:1322897/1‑149 (MQ=255)
                                                                                      tcttctTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGtttttt                                                                                                                                        >  1:618360/1‑72 (MQ=255)
                                                                                      tcttctTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGaaa                                                                      >  3:298799/1‑138 (MQ=255)
                                                                                      tcttctTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGaaa                                                                      <  4:298799/138‑1 (MQ=255)
                                                                                        ttcttcACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTaaa                                                                >  1:477097/1‑142 (MQ=255)
                                                                                        ttcttcACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTaaa                                                                <  2:477097/142‑1 (MQ=255)
                                                                                            tcACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAAt                                                               <  4:119398/139‑1 (MQ=255)
                                                                                            tcACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAAt                                                               >  3:119398/1‑139 (MQ=255)
                                                                                              aCTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACt‑t                                                                                                                                                 <  4:1032777/55‑1 (MQ=255)
                                                                                              aCTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACt‑t                                                                                                                                                 >  3:1032777/1‑55 (MQ=255)
                                                                                               cTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGaa                                                  >  1:1792237/1‑149 (MQ=255)
                                                                                                tAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTaaa                                                                >  1:810959/1‑134 (MQ=255)
                                                                                                tAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTaaa                                                                <  2:810959/134‑1 (MQ=255)
                                                                                                 aaCCTCTTTAAACTCATGTCGATAACGGTCAAAAAACACA‑AGTAATCACTGTGCGTTTTTtg                                                                                                                                       <  1:901346/62‑1 (MQ=2)
                                                                                                   ccTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGttt                                                                                   <  4:1773675/112‑1 (MQ=255)
                                                                                                   ccTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGttt                                                                                   >  3:1773675/1‑112 (MQ=255)
                                                                                                     tctTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGtt                                                                                    >  4:280553/1‑109 (MQ=255)
                                                                                                     tctTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGtt                                                                                    <  3:280553/109‑1 (MQ=255)
                                                                                                     tctTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACttt                                            >  1:1319253/1‑149 (MQ=255)
                                                                                                     tctTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTCTTTGACTGACTTTACAACTCTCATTATTCGc                                                                                                            >  4:1302679/1‑85 (MQ=255)
                                                                                                     tctTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGGGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGc                                                                                                            <  3:1302679/85‑1 (MQ=255)
                                                                                                       tttAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACtttt                                           >  4:1332846/1‑148 (MQ=255)
                                                                                                       tttAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACtttt                                           <  3:1332846/148‑1 (MQ=255)
                                                                                                          aaaCTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGtttt                                                                                  >  4:879153/1‑106 (MQ=255)
                                                                                                          aaaCTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGtttt                                                                                  <  3:879153/106‑1 (MQ=255)
                                                                                                          aaaCTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGtttt                                                                                  >  4:977413/1‑106 (MQ=255)
                                                                                                          aaaCTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGtttt                                                                                  <  3:977413/106‑1 (MQ=255)
                                                                                                           aaCTCATGTCGATAACGGTGAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGAtt                                      <  1:1155505/149‑1 (MQ=255)
                                                                                                           aaCTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTAc                                                      <  2:1304099/133‑1 (MQ=255)
                                                                                                           aaCTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTAc                                                      >  1:1304099/1‑133 (MQ=255)
                                                                                                           aaCTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGAtt                                      <  1:1167002/149‑1 (MQ=255)
                                                                                                           aaCTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGAtt                                      <  2:1503112/149‑1 (MQ=255)
                                                                                                           aaCTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGAtt                                      >  2:1167002/1‑149 (MQ=255)
                                                                                                           aaCTCATGTCGATAACGGTCAAAAAACACACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGAtt                                      >  2:1155505/1‑149 (MQ=255)
                                                                                                              tCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGt                                                                    <  2:69694/116‑1 (MQ=255)
                                                                                                              tCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGt                                                                    >  1:69694/1‑116 (MQ=255)
                                                                                                              tCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGtt                                   >  1:796152/1‑149 (MQ=255)
                                                                                                               cATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGttt                                  >  2:565764/1‑149 (MQ=255)
                                                                                                                       tAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGttt                                  >  3:253134/1‑141 (MQ=255)
                                                                                                                       tAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGttt                                  <  4:253134/141‑1 (MQ=255)
                                                                                                                        aaCGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGAtt                                      <  1:790945/136‑1 (MQ=255)
                                                                                                                            gTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTc                     >  3:314284/1‑149 (MQ=255)
                                                                                                                            gTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTc                     <  1:1322897/149‑1 (MQ=255)
                                                                                                                             tCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACt                                                     <  2:1616385/116‑1 (MQ=255)
                                                                                                                             tCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACt                                                     >  1:1616385/1‑116 (MQ=255)
                                                                                                                              cAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCAt                   <  2:236763/149‑1 (MQ=255)
                                                                                                                               aaaaaaCGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTg                                                    >  1:804061/1‑115 (MQ=255)
                                                                                                                               aaaaaaCGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTg                                                    <  2:804061/115‑1 (MQ=255)
                                                                                                                               aaaaaaCGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCAtt                  >  1:410017/1‑149 (MQ=255)
                                                                                                                                   aaCGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGaa              <  4:558636/149‑1 (MQ=255)
                                                                                                                                   aaCGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGaa              >  3:544770/1‑149 (MQ=255)
                                                                                                                                    aCGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGaaa             <  2:796152/149‑1 (MQ=255)
                                                                                                                                               ttACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCa  <  4:314284/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
ATAATAAAACGTTTTTATGTTTTTAAATTAAGTTATAAAAATTTTCCCGAGACAATTCATCAATAGGTATGGAGTGTACAGGAATATCTTCTTCACTAACCTCTTTAAACTCATGTCGATAACGGTCAAAAAACGCACAGTGATTACT‑TGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCA  >  NC_000913/4571936‑4572227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑