New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4051977	173 (0.930)	10 (0.060)	8/226	NT	5.5%	intergenic (+121/‑68)	yihI/hemN	activator of Der GTPase/coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent
	?	NC_000913	= 4051999	179 (1.010)					intergenic (+143/‑46)	yihI/hemN	activator of Der GTPase/coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent

GAAGACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4051824‑4051977 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGCCACTTTTGTCGCCGCGACAACCGCTGTAGTTTAACGAATAACCACACCAGATAACATATAACCGGAAGGGTTATCAGCAGAACGGGAAGGCCCACGGCGGCAATCCGTTA  <  NC_000913/4051999‑4051854                                                                                                                                                                                                                                                                                                                 GAAGACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AA                                                                                                                                                          >  1:1323736/1‑149 GAAGACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AA                                                                                                                                                          >  2:476482/1‑149 GAAGACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AA                                                                                                                                                          >  3:538604/1‑149 GAAGACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AA                                                                                                                                                          >  4:1356735/1‑149  AAGACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AAC                                                                                                                                                         <  4:1620020/149‑1    GACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCG                                                                                                                                                       >  4:977241/1‑149     ACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGG                                                                                                                                                      <  4:1536557/149‑1     ACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGG                                                                                                                                                      <  2:1323736/149‑1         GATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGC                                                                                                                                                     <  2:1761144/146‑1         GATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGC                                                                                                                                                     >  1:1761144/1‑146                                                     TTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTACGGCGTACCGGCGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGCCACTTTTGT                                                                                                       >  4:400796/1‑149                                                     TTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTACGGCGTACCGGCGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGCCACTTTTGT                                                                                                       <  3:400796/149‑1                                                           TTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGC                                                                                                                                                     >  3:859475/1‑96                                                           TTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGC                                                                                                                                                     <  4:859475/96‑1                                                                 TGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGC                                                                                                                                                     >  1:917260/1‑90                                                                 TGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGC                                                                                                                                                     <  2:917260/90‑1                                                                          TTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTACGGCGTACCGGCGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGC                                                                                                                >  2:507444/1‑119                                                                          TTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTACGGCGTACCGGCGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGC                                                                                                                <  1:507444/119‑1                                                                                       TTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGCTGATG‑CCCGTTTCGGGTCATCAGCCG                                                                                                                          <  2:1714269/94‑1                                                                                       TTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGCTGATG‑CCCGTTTCGGGTCATCAGCCG                                                                                                                          >  1:1714269/1‑94                                                                                                          GTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGCGGATG‑CCCGTTTCGGGTCATCAGCCGGT                                                                                                                        <  2:999564/77‑1                                                                                                          GTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGCGGATG‑CCCGTTTCGGGTCATCAGCCGGT                                                                                                                        >  1:999564/1‑77                                                                                                                                   GACAAAAGTGGCTGC‑GC‑AACCGGCGGATG‑CCCGTTTCGGGTCATCA                                                                                                                              <  2:313717/46‑1                                                                                                                                   GACAAAAGTGGCTGC‑GC‑AACCGGCGGATG‑CCCGTTTCGGGTCATCA                                                                                                                              >  1:313717/1‑46                                                                                                                                                      AACCGGCTGATGACCCGAAACGGG‑CATCCGCCGGTTGCGCAGCCACTTTTGTCGCCGCGACAACCGCTGTAGTTTAACGAATAACCACACCAGATAACATATAACCGGAAGGGTTAT                                      <  2:792180/117‑1                                                                                                                                                      AACCGGCTGATGACCCGAAACGGG‑CATCCGCCGGTTGCGCAGCCACTTTTGTCGCCGCGACAACCGCTGTAGTTTAACGAATAACCACACCAGATAACATATAACCGGAAGGGTTAT                                      >  1:792180/1‑117                                                                                                                                                        CCGGCGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGCCACTTTTGTCGCCGCGACAACCGCTGTAGTTTAACGAATAACCACACCAGATAACATATAACCGGAAGGGTTATCAGCAGAACGGGAAGGCCCACGGCGGCAATCCGT    <  3:1635840/149‑1                                                                                                                                                         CGGCGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGCCACTTTTGTCGCCGCGACAACCGCTGTAGTTTAACGAATAACCACACCAGATAACATATAACCGGAAGGGTTATCAGCAGAACGGGAAGGCCCACGGCGGCAATCCGTT   >  2:800469/1‑149                                                                                                                                                          GGCGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGCCACTTTTGTCGCCGCGACAACCGCTGTAGTTTAACGAATAACCACACCAGATAACATATAACCGGAAGGGTTATCAGCAGAACGGGAAGGCCCACGGCGGCAATCCGTTA  <  2:483785/149‑1                                                                                                                                                           GCGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGCCACTTTTGTCGCCGCGACAACCGCTGTAGTTTAACGAATAACCACACCAGATAACATATAACC                                                 >  2:67967/1‑101                                                                                                                                                           GCGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGCCACTTTTGTCGCCGCGACAACCGCTGTAGTTTAACGAATAACCACACCAGATAACATATAACC                                                 <  1:67967/101‑1                                                                                                                                                                                                                                                                                                                 GAAGACATGATGCGTCTGCTGCGGGGCAACTAACGGATTGCCGCCGTGGGCCTTCCCGTTCTGCTGATAACCCTTCCGGTTATATGTTATCTGGTGTGGTTATTCGTTAAACTACAGCGGTTGTCGCGGCGACAAAAGTGGCTGC‑GC‑AACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4051824‑4051977 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcGGATG‑CCCGTTTCGGGTCATCAGCCGGTTGCGCAGCCACTTTTGTCGCCGCGACAACCGCTGTAGTTTAACGAATAACCACACCAGATAACATATAACCGGAAGGGTTATCAGCAGAACGGGAAGGCCCACGGCGGCAATCCGTTA  <  NC_000913/4051999‑4051854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.