| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,648,348 | C→T | 5.5% | intergenic (+7/‑160) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,648,348 | 0 | C | T | 5.5% | 429.1 / 9.9 | 126 | intergenic (+7/‑160) | dicA/ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base C (62/57); new base T (5/2); total (67/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 | |||||||||||
Only 100 of 137 total aligned reads displayed.
TTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAGGGG > NC_000913/1648211‑1648494 | ttGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATc > 1:1152913/1‑149 (MQ=255) cTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 3:477769/149‑1 (MQ=255) tttAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCttt > 2:1592862/1‑144 (MQ=255) tGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 3:472776/136‑1 (MQ=255) tGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 1:1351324/136‑1 (MQ=255) tGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 3:1478141/136‑1 (MQ=255) tGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa > 4:1478141/1‑136 (MQ=255) ccAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGt < 3:251094/149‑1 (MQ=255) tCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCTGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa > 4:436292/1‑128 (MQ=255) tCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa > 4:280436/1‑128 (MQ=255) tCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTAAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTa < 3:280436/128‑1 (MQ=255) gAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTa > 1:660144/1‑142 (MQ=255) ggATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACGTCATCAATGA‑GTTATCTTTTACCACATCAATTa < 2:1188260/132‑1 (MQ=255) gATACCCAGCTCGCCGAAATGCGAGCTCGAGTAATAGACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGAGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGtt < 4:170874/135‑1 (MQ=255) gATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGtt < 3:405270/135‑1 (MQ=255) gATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGtt > 3:170874/1‑135 (MQ=255) gATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGtt > 4:405270/1‑135 (MQ=255) ccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATc > 1:1636265/1‑109 (MQ=255) ccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATc > 2:1195436/1‑149 (MQ=255) cAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAAC‑TCATTGATGATGTTATCt > 4:820118/1‑109 (MQ=38) cAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAAC‑TCATTGATGATGTTATCt < 3:820118/109‑1 (MQ=38) tCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTg > 4:1344391/1‑149 (MQ=255) gCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGAc > 4:1873702/1‑149 (MQ=255) gAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCCTCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAAt < 4:1192814/138‑1 (MQ=255) gAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAAt > 3:1192814/1‑138 (MQ=255) gAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa < 3:942276/143‑1 (MQ=255) gAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa > 4:942276/1‑143 (MQ=255) gAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATg < 2:718324/149‑1 (MQ=255) gAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATg > 1:773781/1‑149 (MQ=255) aaaaaCTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACGAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCtata > 3:1683311/1‑109 (MQ=255) ttCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAACTAAAAGATAACATCATCAATGA‑GTTATCTTTTACcaca > 1:282480/1‑85 (MQ=255) ttCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACcaca < 2:282480/85‑1 (MQ=255) tCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt < 2:773781/149‑1 (MQ=255) tCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt < 2:1717023/149‑1 (MQ=255) tCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt < 3:1344391/149‑1 (MQ=255) aaTAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt < 4:754516/147‑1 (MQ=255) aaTAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGtt > 3:754516/1‑147 (MQ=255) aTAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGata > 1:106432/1‑123 (MQ=255) aTAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGata < 2:106432/123‑1 (MQ=255) tAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑TTTATCTTTTACCACATCAATTATGTTACCtata < 1:537926/98‑1 (MQ=255) tAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCtata > 2:537926/1‑98 (MQ=255) tAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCa > 4:1454339/1‑149 (MQ=255) aCTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa > 4:1012841/1‑124 (MQ=255) aCTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa < 3:1012841/124‑1 (MQ=255) tctTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGctgagaa > 2:685947/1‑143 (MQ=255) tctTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGctgagaa < 1:685947/149‑7 (MQ=255) tctTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAac > 1:1405534/1‑149 (MQ=255) tttGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCAGACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAacac > 3:1632547/1‑149 (MQ=255) tgatgaATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAacacac < 4:1632547/149‑1 (MQ=255) gaagaaTTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa > 3:960738/1‑117 (MQ=255) gaagaaTTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa < 4:960738/117‑1 (MQ=255) agaaTTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCAc < 1:1851653/100‑1 (MQ=255) agaaTTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGc > 3:1137829/1‑149 (MQ=255) tACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGgt < 2:1405534/149‑1 (MQ=255) tACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGgt < 2:400421/149‑1 (MQ=255) tAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCaa > 1:487166/1‑133 (MQ=255) tAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt > 2:1819790/1‑149 (MQ=255) tAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt > 4:1684286/1‑149 (MQ=255) tAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt > 1:540327/1‑149 (MQ=255) aaaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAAt > 2:1371849/1‑118 (MQ=255) aaaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAAt < 1:1371849/118‑1 (MQ=255) aaaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTtc < 1:1195436/149‑1 (MQ=255) aaaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTtc < 2:540327/149‑1 (MQ=255) aaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCAc > 3:1267373/1‑90 (MQ=255) aaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCAc < 4:1267373/90‑1 (MQ=255) aaaGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTtct < 1:1819790/149‑1 (MQ=255) aGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCa < 4:1137829/149‑1 (MQ=255) tCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCa < 3:704247/146‑1 (MQ=255) tCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCa > 4:704247/1‑146 (MQ=255) gtaCAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTc > 1:885844/3‑149 (MQ=255) gACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCaa > 4:1625867/1‑117 (MQ=255) gACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCa > 2:1302346/1‑137 (MQ=255) gACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTcc > 4:592151/1‑149 (MQ=255) gACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTcc > 2:1031569/1‑149 (MQ=255) aaaTAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCt < 1:1031569/149‑1 (MQ=255) aaaTAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCt < 3:592151/149‑1 (MQ=255) gtAAAAGATAAC‑TCATTGATGATGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTAc > 3:394956/2‑149 (MQ=255) tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa < 4:1264464/85‑1 (MQ=255) tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTa > 3:1264464/1‑85 (MQ=255) tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATg < 3:360362/91‑1 (MQ=255) tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATg > 4:360362/1‑91 (MQ=255) tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAAt > 2:550378/1‑97 (MQ=255) tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGc < 2:1239508/106‑1 (MQ=255) tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGc > 1:1239508/1‑106 (MQ=255) tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTAcc > 2:1183454/1‑149 (MQ=255) tAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTAcc > 3:1767451/1‑149 (MQ=255) aaaaGATAAC‑TCATTGATGATGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTAccc > 4:498640/1‑149 (MQ=255) aGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCtt < 1:1210617/96‑1 (MQ=255) aGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATACCAGACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAg > 2:1001315/1‑149 (MQ=255) aGATAAC‑TCATTGATGATGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATa > 1:769826/1‑57 (MQ=17) aGATAAC‑TCATTGATGATGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAg > 3:1475653/1‑149 (MQ=255) gATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGc < 3:1521405/149‑1 (MQ=255) atcatcAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt > 3:1826118/1‑116 (MQ=255) atcatcAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGtt < 4:1826118/116‑1 (MQ=255) atcatcAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAg < 2:885844/149‑1 (MQ=255) atcatcAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAg > 4:1502561/1‑149 (MQ=255) tcatcaATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCa < 1:1646044/119‑1 (MQ=255) tcatcaATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCa > 2:1646044/1‑119 (MQ=255) atcaATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAgggg > 4:525586/1‑149 (MQ=255) atcaATGA‑GTTATCTTTTACCAAATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAgggg > 2:713855/1‑149 (MQ=255) | TTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGA‑GTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGATATGTTAGTCATGGCTAATCTTGTTTGCATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAGGGG > NC_000913/1648211‑1648494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |