| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3231308 | 40 (0.780) | 5 (0.100) | 5/240 | NT | 13.2% | noncoding (57/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 3231327 | 28 (0.580) | noncoding (76/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
GCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGG > NC_000913/3231169‑3231456 | gcgcACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCgg < 2:73497/149‑1 (MQ=255) ccAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGc < 3:22155/149‑1 (MQ=255) aaaTTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGt < 1:337448/149‑1 (MQ=255) aaTTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGtt < 3:429768/149‑1 (MQ=255) aaTTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGtt < 1:453103/149‑1 (MQ=255) aTTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTg < 2:438240/149‑1 (MQ=255) aTTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTg > 1:217602/1‑149 (MQ=255) aTTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTg > 1:90026/1‑149 (MQ=255) ttCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TTGCCGGATgcaacgcttgccgcgtttta < 1:76001‑M1/149‑21 (MQ=255) ccTGGAGGCCCGCGCATTGGTAAAGGTTGAATAACGATTTTTTCCGTAAGCAAAATTTTCAAACTGTGGGCGGAGGCGGCGAAAACGCTTTATCCGCCCTAC‑TGTGGAAACCCCCTTGGCCGAAT‑AAACGCGGCAAGCGTTGCATCCgg < 3:82184/149‑1 (MQ=255) ccGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCa > 1:335356/1‑149 (MQ=255) tttGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGcc > 4:171194/1‑149 (MQ=255) atatGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTgg > 4:277730/1‑149 (MQ=255) aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGtt < 4:109716/109‑1 (MQ=255) aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGtt > 3:109716/1‑109 (MQ=255) aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGt > 4:458011/1‑149 (MQ=255) gATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGa > 3:414114/1‑149 (MQ=255) ccGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTa > 4:238213/1‑149 (MQ=255) gCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGcc < 3:171194/149‑1 (MQ=255) tttGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAtg < 3:458011/149‑1 (MQ=255) ttGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAtgt < 2:18133/149‑1 (MQ=255) gCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAtgtgt < 2:217602/149‑1 (MQ=255) aaCTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATgtgtgt > 2:78524/1‑149 (MQ=255) gCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATgcaacgcttgccgcgttttat > 1:428468‑M1/1‑56 (MQ=255) gCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATgcaacgcttgccgcgttttat < 2:428468‑M1/77‑22 (MQ=255) gcgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATaa < 3:277730/149‑1 (MQ=255) cgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAg < 1:78524/149‑1 (MQ=255) gTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATgcaacgcttgccgcgttttatccggccagga > 4:434426‑M1/1‑45 (MQ=255) gTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATgcaacgcttgccgcgttttatccggccagga < 3:434426‑M1/76‑32 (MQ=255) aaCGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGAcgc < 2:335356/149‑1 (MQ=255) aCGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGtt < 2:436411/58‑1 (MQ=255) aCGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGtt > 1:436411/1‑58 (MQ=255) cTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAtgtgt > 4:387863/1‑120 (MQ=255) cTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAtgtgt < 3:387863/120‑1 (MQ=255) cTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACaa < 3:238213/149‑1 (MQ=255) cTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACaa < 2:90026/149‑1 (MQ=255) ttATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAg > 4:436766/1‑149 (MQ=255) cTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATc < 3:436766/149‑1 (MQ=255) tgCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAt > 2:474594/1‑99 (MQ=255) tgCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACAt < 1:474594/99‑1 (MQ=255) aaTCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGc > 2:129523/1‑149 (MQ=255) cctcc‑tGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCAcc > 3:184035/1‑149 (MQ=255) ctcc‑tGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGt < 2:12305/129‑1 (MQ=255) ctcc‑tGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGt > 1:12305/1‑129 (MQ=255) tcc‑tGGCCGGATAAAACGCGGCAAGCGTTGCatccggccaggaggattgcacatgtagggcggataaggcgtttac > 4:434426‑M2/1‑31 (MQ=255) tcc‑tGGCCGGATAAAACGCGGCAAGCGTTGCatccggccaggaggattgcacatgtagggcggataaggcgtttac < 3:434426‑M2/76‑46 (MQ=255) ggCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCa < 1:129523/149‑1 (MQ=255) gATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGc < 4:414114/149‑1 (MQ=255) aTAAAACGCGGCAAGCGTTGCatccggccaggaggattgcacatgtagggcggataaggcgtttacgccgcatccgc > 1:428468‑M2/1‑21 (MQ=255) aTAAAACGCGGCAAGCGTTGCatccggccaggaggattgcacatgtagggcggataaggcgtttacgccgcatccgc < 2:428468‑M2/77‑57 (MQ=255) tAAAACGCGGCAAGCGTTGCatccggcaaggaggattgcacatgtagggcggataaggcgtttacgccgcatccgccagcagttgcaaattattgcttacggaaaaaatcgttatacaacatatacaaatgcgcggcactccaggagaa < 1:76001‑M2/149‑130 (MQ=255) | GCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCC‑TGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGG > NC_000913/3231169‑3231456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |