New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	343971 =	126 (0.890)	19 (0.150)	13/158	NT	15.1%	intergenic (+38/‑205)	yahK/yahL	broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein
	?	NC_000913	344009 =	102 (0.810)					intergenic (+76/‑167)	yahK/yahL	broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing/uncharacterized protein

TGTGTACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/344078‑343971 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagagcgaa‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCGATT  >  NC_000913/344009‑344106                                                                                                                                                                                                                 TGTGTACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGG                                                                                                             >  1:2088824/1‑100  GTGTACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGA                                                                                                            >  2:351723/1‑100  GTGTACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGA                                                                                                            >  2:2206593/1‑100  GTGTACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGA                                                                                                            >  2:1129237/1‑100   TGTACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAG                                                                                                           <  1:2663980/100‑1   TGTACTGGAGGGCGTTAATTTAACAATTTAAATATACGTTATAGGTTTTACTGCTACTTTGATATTATTTAGCTCTCCTTAACTAAAAAGTTAAGTGGAG                                                                                                           >  2:2366394/1‑100     TACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTAGTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAG                                                                                                         <  1:2278657/100‑1     TACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAG                                                                                                         <  1:3237057/100‑1      ACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGC                                                                                                        >  2:3925692/1‑100      ACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGC                                                                                                        <  1:2593611/100‑1       CTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCG                                                                                                       >  1:3111184/1‑100       CTGGAGGGCGTTAATTTAACAACTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCG                                                                                                       >  2:2836009/1‑100         GGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA                                                                                                     <  1:1363729/100‑1           AGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCG                                                                                                       >  2:2642088/1‑96                                                             TTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATT                                                >  1:104396/1‑100                                                               GATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAA                                              >  2:38946/1‑100                                                                 TATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACG                                            >  2:3204860/1‑100                                                                   TTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACG                                            >  1:3159278/1‑98                                                                    TATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCC                                          >  1:3280539/1‑99                                                                     ATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCT                                        >  1:2131295/1‑100                                                                      TTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATACCGTAAATTTAAATTGTTAAATTAAAGCCC                                         >  2:3721881/1‑98                                                                      TTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTC                                       >  1:97285/1‑100                                                                      TTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTC                                       >  1:2811489/1‑100                                                                      TTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAAGTAACGCCCTC                                       >  2:2593861/1‑100                                                                       TTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCC                                      >  1:3007159/1‑100                                                                        TCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCA                                     >  1:1623333/1‑100                                                                          GCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGT                                   >  2:2640253/1‑100                                                                           CTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTA                                  >  1:3213318/1‑100                                                                           CTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTA                                  >  2:1692186/1‑100                                                                              TCCTTAACTAAAAAGTTAAGTGGAGAGCGAAGTTAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACA                                >  1:3544658/1‑100                                                                              TCCTTAACTAAAAAGTTAA‑‑GGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAA                             >  1:2942393/1‑100                                                                               CCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACA                              >  1:376233/1‑100                                                                               CCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACA                              >  1:3818448/1‑100                                                                                                   GGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTAT          >  2:1465626/1‑100                                                                                                   GGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTAT          >  2:3664277/1‑100                                                                                                   GGAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCCCCAGTACACAATACTTCACACGTTAGTTAT          >  2:1381784/1‑100                                                                                                    GAGAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATG         <  2:2916070/100‑1                                                                                                      GAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAG       <  1:544285/100‑1                                                                                                      GAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAG       <  2:2983562/100‑1                                                                                                      GAGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAG       <  2:3902246/100‑1                                                                                                       AGCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGC      <  1:469101/100‑1                                                                                                        GCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACGCAATACTTCACACGTTAGTTATGAGCG     >  1:3821805/1‑100                                                                                                        GCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCG     >  2:2093483/1‑100                                                                                                        GCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCG     >  1:2537283/1‑100                                                                                                        GCGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCG     >  1:1333699/1‑100                                                                                                         CGAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCGA    >  1:3744661/1‑100                                                                                                          GAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCGAT   <  2:2803244/100‑1                                                                                                          GAA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCG     <  2:3149409/98‑1                                                                                                           AA‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACACCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCGATT  >  2:1619687/1‑100                                                                                                                                                                                                                 TGTGTACTGGAGGGCGTTAATTTAACAATTTAAATTTACGTTATAGGTTTTACTGCTACTTTGATATTATTTCGCTCTCCTTAACTAAAAAGTTAAGTGGAGAGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/344078‑343971 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagagcgaa‑ATAATATCAAAGTAGCAGTAAAACCTATAACGTAAATTTAAATTGTTAAATTAACGCCCTCCAGTACACAATACTTCACACGTTAGTTATGAGCGATT  >  NC_000913/344009‑344106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.