| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,984 | T→G | 33.7% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 33.7% | 492.6 / inf | 291 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (82/111); new base G (92/6); total (174/117) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.63e-19 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.34e-02 | |||||||||||
Only 100 of 295 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:1774437/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2797547/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:1239567/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1896680/1‑100 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:634613/1‑100 (MQ=255) caggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 1:2549909/98‑1 (MQ=255) caggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 1:3440299/98‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:1981352/100‑1 (MQ=37) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:1005494/100‑1 (MQ=37) ggATGGCGCTGCACGCAGACGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTGGTTTATGCCGTTTGCGGCTTTAACGCCtttttcg > 2:1585974/1‑93 (MQ=25) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:552597/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTGTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:295458/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3391859/99‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:1868115/100‑1 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑a > 1:2932017/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aa > 1:3822560/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATACCGGATCCGGCGTTAACGCCTTATCCGCCCT‑‑AC‑aaa > 2:2724628/1‑99 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt > 1:1325645/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt > 1:3256633/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATc > 1:1916829/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATc > 1:3011338/1‑100 (MQ=255) gaCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACACAGTACGCTATGTTTATGCCGAATGCGTCTTTAACGCCTTATCCGTCCT‑‑Acgca > 2:1485222/2‑93 (MQ=25) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg < 1:3510278/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg < 2:3814777/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt < 2:834424/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt > 2:1686935/1‑99 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 2:814803/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:3787153/100‑1 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAt < 1:3620351/100‑1 (MQ=255) gCACAGCGCTACCGGGTATTCAGATGGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 2:1924443/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 1:1653585/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCa > 1:1399735/1‑100 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCaa < 1:1145316/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACTAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGTCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt < 2:2364817/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATa < 2:128994/100‑1 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTg < 2:1773465/100‑1 (MQ=255) cACCGGGTATACAAATTGTTGACAAAGTGCGATTTGTTTATGGCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTg > 1:2662340/1‑100 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑Ga > 1:819259/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAt‑tt < 2:433215/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAt‑ttt > 1:1104764/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAt‑ttt > 1:163557/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑g < 2:2290613/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑g < 2:3715525/100‑1 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAgg < 1:698438/100‑1 (MQ=255) cataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGc > 2:3227649/6‑100 (MQ=18) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGcc < 2:2211694/100‑1 (MQ=255) taaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCt > 2:1983579/4‑100 (MQ=18) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGa > 2:2556248/1‑100 (MQ=255) aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAg < 1:1216033/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGc < 1:723624/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGa > 2:1394693/1‑100 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:1123426/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:3528445/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:2122604/1‑100 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAACATATTG‑CA‑ATTC‑TCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:2104335/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg < 1:2324286/96‑1 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:890024/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTG‑CA‑GTTT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 1:450411/4‑100 (MQ=25) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 2:3018724/100‑1 (MQ=255) aggCCGGATAAGGAGATCACGCCGCATCCGGCCT‑‑AC‑AATACTGTGCAAATTCAATATATTG‑CA‑GGAA‑ACAC‑‑GTAGGCCTGATAAGCCAAGCGCATCAGGc > 2:2434693/3‑100 (MQ=17) ggCCGGATAAGGGGCTTACGCCGCATCCGGCAT‑‑AC‑AAGAACGTGCAAATTCAACAAATTGTGATGCAT‑CCT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:746507/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:2442379/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1631156/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:840017/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:599739/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TGAG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:135189/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTG‑C‑‑‑AAT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2194927/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTG‑C‑‑‑AAT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1823785/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACCTTGCTAATTCAATATATTG‑CAGGGAC‑TAT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 1:2888249/2‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:2328186/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:3093156/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:3892116/1‑99 (MQ=17) gCCGGATAAGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:202301/1‑100 (MQ=255) ctggataaggcgTTCACGCCGCATCCAGCCT‑‑AC‑AAAATTGTGCAAAATCAATGGATTG‑CA‑CAGC‑TAGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaga > 1:2728497/9‑98 (MQ=25) ccggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1746472/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:915809/9‑98 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:3074817/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:302215/9‑98 (MQ=17) ccGGATAAGGCGTTCACGCCGCATCCGGCATGAAC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GAGA‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:201161/1‑100 (MQ=17) ggataaggcgTTTACGCCGCATCTGGCCT‑‑AC‑AAATTCTTCCAAATTCGATATATTG‑CT‑GAAA‑TCAT‑‑GTAGGCCTGATAAGCGTATCGCATCAGGCAattt > 1:148022/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1516479/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTG‑CA‑GTTT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 1:3203297/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:212303/7‑100 (MQ=18) ggATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt < 2:3883383/100‑1 (MQ=255) gataaggcgTTTACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 2:1845336/6‑100 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1586966/100‑1 (MQ=255) taaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCGTGCAAATTCAATACATTG‑CA‑TGGG‑CCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattttac > 2:1429123/4‑98 (MQ=18) tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAACTCGTGTAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 2:2668498/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:36715/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2247401/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:3595180/100‑1 (MQ=255) tAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 1:1116322/100‑1 (MQ=255) aaCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:1267549/1‑100 (MQ=255) aCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1180630/100‑1 (MQ=255) aCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 2:1502175/1‑100 (MQ=255) cGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa < 1:3749156/100‑1 (MQ=255) gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 1:3155332/1‑100 (MQ=255) gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:3345244/100‑1 (MQ=255) gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑AA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 2:257960/100‑1 (MQ=255) cTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc < 2:2867253/100‑1 (MQ=255) | TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |