| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,706,048 | G→T | 32.5% | intergenic (‑258/+50) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,706,048 | 0 | G | T | 32.5% | 495.4 / 255.2 | 272 | intergenic (‑258/+50) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (80/98); new base T (81/3); total (170/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.08e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.81e-01 | |||||||||||
Only 100 of 282 total aligned reads displayed.
TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCA > NC_000913/3705949‑3706147 | gcTTTGTTTATGCCGGATGCGTCGTTAATGCCTTTTTTTGTTT‑AC‑AAAATCGCGCCAACTCAAAACATTG‑CA‑GAAG‑TTTC‑‑ATAGGCCTGATAAGCGCAg < 2:1717930/99‑1 (MQ=12) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAC‑AAAAACCTGCAAATTCAATATATTG‑CA‑GGAT‑ACGT‑‑GTAGGCCTGATAAGCGTAGCGCa > 1:3159563/8‑100 (MQ=12) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:3139033/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAATCGTGCAAATTCAACATATTG‑C‑‑‑AAT‑TCTCTTGTAGGCCTGATAAGCGTAGCGCATc > 1:1249574/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:3864568/7‑100 (MQ=21) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 1:875368/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:2122604/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:1811/100‑1 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:2980829/100‑1 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:1140647/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg < 1:2324286/96‑1 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2324274/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:890024/4‑100 (MQ=18) tATGCCGGCTGCGGCGTTAACGCCTTCTCCGGCCT‑AC‑TAAATCGTGCAAATTCAATACATTG‑CA‑TAAT‑TTTC‑‑GTATTGCTGATAAGCGGAGCGCATCAgg < 2:2712831/100‑1 (MQ=17) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 2:150553/100‑1 (MQ=255) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 2:3018724/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3274975/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAAGCGTGCAAATTCAATACATTG‑CATGGGC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2734088/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1742172/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAGTCGTATAAATTCAATGTATTG‑CA‑GTTT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:2884127/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2163579/3‑100 (MQ=21) aggCCGGATAAGGCGTTAACGCCGCATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:1418089/3‑100 (MQ=18) ggtcggataaggcgTTCACGCCGCATCCGACCC‑AC‑AAAGTCTTGCAAAATCAATAAATTG‑CAGGAAC‑GAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1896532/11‑100 (MQ=21) ggCCGGATAAGGGGCTTACGCCGCATCCGGCAT‑AC‑AAGAACGTGCAAATTCAACAAATTGTGATGCAT‑CCT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:746507/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1631156/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TGAG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:135189/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2571781/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GAGA‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1747833/2‑100 (MQ=17) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GACT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1059684/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAATCGTGCAAATTCAACATATTG‑CA‑ATTC‑TCTT‑‑GTAGGTCTGATAAGCGTAGCGCATCAGGctg > 1:563498/1‑98 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:3093156/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAGTCGTATAAATTCAATGTATTG‑CA‑GTTT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 1:1109645/1‑99 (MQ=25) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAGTCGTATAAATTCAATGTATTG‑CA‑GTTT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 1:1590760/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:592406/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:3892116/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑AC‑AAAACTGTGCAAATTCAATATATTG‑CA‑GGAA‑ACAC‑‑GTAGGCCTGAT‑AGCGAAGCGCATCAGGCagt > 2:1406779/1‑98 (MQ=18) gCCGGATAAGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:202301/1‑100 (MQ=255) ccggataaggcgTTCACGCCGCATCCGGCCT‑AC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:3074817/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCT‑AC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GGAG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:3738540/9‑100 (MQ=21) ccGGATAAGGCGTTTACGCCGCATCCGGCCT‑AC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTT‑‑GTAGGCCTGATAAGCGTAACGCATCAGGc > 2:1849155/1‑97 (MQ=17) cggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 1:3495562/8‑97 (MQ=17) cggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAAACAGTGCAAATTCAATATATTG‑CA‑ATCT‑TCTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaagc > 1:1637391/8‑97 (MQ=21) cggataaggcgTTCACGCCGCATCCGGCCT‑AC‑AAAATTGTGTAAATTCAATAACTTG‑AT‑CGAT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:670402/8‑100 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCT‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2632075/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCTGCCT‑AC‑AAAAGCACGCAAATTCAATATATTG‑CA‑GAGA‑TGGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:2198275/7‑100 (MQ=14) ggataaggcgTTCACGCCGCATCCGGCCT‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3946351/7‑100 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:3235920/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:2015218/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:985615/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:36715/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:35405/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:1493828/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 2:2926462/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:1612480/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:3595180/100‑1 (MQ=255) ttAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:3227671/100‑1 (MQ=255) aaCGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:2086203/1‑100 (MQ=255) aCGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:830338/100‑1 (MQ=255) gCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 2:1244451/100‑1 (MQ=255) ccTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt < 1:818842/100‑1 (MQ=255) tATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt < 1:2345365/100‑1 (MQ=255) tccttccT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGt < 2:3884239/95‑1 (MQ=255) cGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTAt < 1:2476189/100‑1 (MQ=255) c‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGTGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttn < 2:1931116/100‑2 (MQ=255) c‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt > 1:2366901/1‑100 (MQ=255) c‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt < 1:2419988/100‑1 (MQ=255) aaaaTCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTa < 1:1657849/100‑1 (MQ=255) aaaTCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTaa < 1:4210/100‑1 (MQ=255) aaaTCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTaa < 1:2193478/100‑1 (MQ=255) aaTCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat < 1:634616/100‑1 (MQ=255) tGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 2:3824882/100‑1 (MQ=255) tGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 2:2227926/100‑1 (MQ=255) tGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 2:2086192/100‑1 (MQ=255) cAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa > 2:3373384/1‑100 (MQ=255) aaaTTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAt < 1:1974633/100‑1 (MQ=255) aaaTTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAt < 1:2705240/100‑1 (MQ=255) cAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAgaga < 1:1327043/100‑1 (MQ=255) cATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATGAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGttt > 1:2393459/1‑100 (MQ=255) aTTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGtttt > 1:3035376/1‑100 (MQ=255) ttG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTc > 2:3787056/1‑100 (MQ=255) g‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGATGTTTTCGa > 1:1576522/1‑100 (MQ=255) g‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa < 2:349183/100‑1 (MQ=255) g‑CA‑GAAT‑TGTC‑‑GTAGGCCTGATAAGCGGGGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCTATAGAGACGTTTTCGa < 2:127637/100‑1 (MQ=255) cA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGaa > 1:3116603/1‑100 (MQ=255) a‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg < 2:181879/100‑1 (MQ=255) a‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg < 2:455336/100‑1 (MQ=255) t‑tttC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGAt > 1:3590499/1‑100 (MQ=255) gTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTg < 1:910787/100‑1 (MQ=255) gTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTg < 1:3404951/100‑1 (MQ=255) gtccTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCt < 2:2398520/98‑1 (MQ=255) ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTTCTATCAGTCTTATATGGCTTTTAATTATTCGATAGAGACGTTTTCTAAGTGATGTTTGCCt > 2:3201867/1‑100 (MQ=38) ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCt < 1:1172942/100‑1 (MQ=255) tGATAAGCGGAGCACATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATg > 1:479381/1‑100 (MQ=255) gATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTCTTGCTTTTAATTCTTCGATAGAGACGTTTTCGAAGTGACGTTTGCCTAATgg > 1:1885206/1‑100 (MQ=38) tAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGAt < 1:1490492/100‑1 (MQ=255) aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCa > 2:1152792/1‑100 (MQ=255) gCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCaa > 2:1975992/1‑100 (MQ=255) cGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAc < 2:147475/100‑1 (MQ=255) ggAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTGATGGATCAAcc < 1:3933044/100‑1 (MQ=255) ggAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAcc < 1:101270/100‑1 (MQ=255) | TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCA > NC_000913/3705949‑3706147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |