Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,679,430 Δ1 bp 15.2% intergenic (‑63/+34) yphF ← / ← yphG putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,679,4300G.15.2% 579.4 / 103.2 197intergenic (‑63/+34)yphF/yphGputative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein
Reads supporting (aligned to +/- strand):  ref base G (85/81);  new base . (17/13);  total (102/95)
Fisher's exact test for biased strand distribution p-value = 6.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.27e-03

Only 100 of 206 total aligned reads displayed.

ATAATAGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCGG  >  NC_000913/2679331‑2679529
                                                                                                   |                                                                                                    
ataataGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAg                                                                                                      <  2:2678083/100‑1 (MQ=255)
  aataGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAgcg                                                                                                    >  2:3614395/1‑100 (MQ=255)
   ataGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAgcgc                                                                                                   >  1:490651/1‑100 (MQ=255)
   ataGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAgcgc                                                                                                   >  2:1838821/1‑100 (MQ=255)
    taGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGcgcg                                                                                                  <  1:532887/100‑1 (MQ=255)
      gATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑Tg                                                                                               >  1:3453855/1‑100 (MQ=255)
       aTTACGGGTTGTTCTCATTTTTTTTTTTATTTAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGTGCGGCAGCGCG‑TGc                                                                                              >  1:3610/1‑100 (MQ=255)
       aTTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑Tg                                                                                               >  1:1520212/1‑99 (MQ=255)
       aTTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGc                                                                                              >  1:2171149/1‑100 (MQ=255)
        ttACGGGTTGTTCTCATTTTTGTAGGCATAGAGTCTCCTGTATGGTTTTTATTAACACCGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGcc                                                                                             <  1:1931297/100‑1 (MQ=255)
        ttACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGcc                                                                                             <  2:538014/100‑1 (MQ=255)
          aCGGGTTGTTCTCATTTTTGTAAGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGc                                                                                           <  1:3374571/100‑1 (MQ=255)
              gttgttCTCATTTTTGTATGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCA‑CGCGCTGCCGCTCat                                                                                       <  1:827899/100‑2 (MQ=255)
              gttgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCaa                                                                                       <  2:4255287/100‑1 (MQ=255)
              gttgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCA‑CGCGCTGCCGCTCat                                                                                       <  1:1194649/100‑2 (MQ=255)
               ttgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCaaa                                                                                      >  2:4160042/1‑100 (MQ=255)
               ttgtgCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCaaa                                                                                      <  1:310744/100‑1 (MQ=255)
                tgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAat                                                                                     >  2:2127661/1‑100 (MQ=255)
                tgttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCA‑CGCGCTGCCGCTCatca                                                                                     <  2:2362792/100‑4 (MQ=39)
                 gttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCA‑CGCGCTGCCGCTCatcac                                                                                    <  2:3345838/100‑5 (MQ=38)
                 gttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCA‑CGCGCTGCCGCTCatcac                                                                                    <  2:2066954/100‑5 (MQ=38)
                 gttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCA‑CGCGCTGCCGCTCatcac                                                                                    <  1:4060629/100‑5 (MQ=38)
                 gttCTCATTTTTGTAGGCATAAAGCCTCCTGTAGGGTTTTTATTAACAACGTCTTATTCTAATTATATTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAata                                                                                    >  1:1660097/1‑100 (MQ=255)
                  ttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCA‑CGCGCTGCCGCTCatcaca                                                                                   <  2:1476390/100‑6 (MQ=38)
                  ttCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCA‑CGCGCTGCCGCTCatcaca                                                                                   <  2:2880378/100‑6 (MQ=38)
                   tctcATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATAtt                                                                                  >  1:1708913/1‑100 (MQ=255)
                     tcATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTAc                                                                                <  1:2602884/100‑1 (MQ=255)
                     tcATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTAc                                                                                <  2:1233770/100‑1 (MQ=255)
                     tcATTTTTGTAGGAATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGAAGAGCGGCAGCGCG‑TGCCTCTCAAAGATTAc                                                                                <  1:855993/100‑1 (MQ=255)
                      cATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACa                                                                               >  1:3633837/1‑100 (MQ=255)
                       aTTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAg                                                                              <  2:2033796/100‑1 (MQ=255)
                       aTTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAg                                                                              <  1:1117545/100‑1 (MQ=255)
                       aTTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAg                                                                              <  1:1804513/100‑1 (MQ=255)
                        tttttGTAGGCATAGAGCCTCCTGTAGGGTTTTTATAAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGt                                                                             >  2:3097767/1‑100 (MQ=255)
                         ttttGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGtt                                                                            >  2:161075/1‑100 (MQ=255)
                               aGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGAGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAgg                                                                      >  1:3312386/1‑100 (MQ=255)
                                ngCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAggg                                                                     >  1:3539489/2‑100 (MQ=255)
                                ggCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAggg                                                                     <  2:2814539/100‑1 (MQ=255)
                                ggCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAggg                                                                     >  1:3813301/1‑100 (MQ=255)
                                 gCATAGAGCCTCCTGTAGGGTTTTTATTAGCAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGt                                                                    <  1:3174422/100‑1 (MQ=255)
                                  cATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGtt                                                                   >  2:3441053/1‑100 (MQ=255)
                                  cATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGtt                                                                   >  2:2275482/1‑100 (MQ=255)
                                    tAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTa                                                                 >  2:908263/1‑100 (MQ=255)
                                    tAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCACTCAAATATTACAGTTAATAGGGTTTa                                                                 >  2:2436628/1‑100 (MQ=255)
                                        gCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGa                                                             >  1:635538/1‑100 (MQ=255)
                                         cctcctGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGan                                                            <  1:4366073/100‑2 (MQ=255)
                                         cctcctGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGaa                                                            <  1:3150294/100‑1 (MQ=255)
                                          ctcctGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAAc                                                           <  1:2779456/100‑1 (MQ=255)
                                            cctGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAAcgc                                                         <  2:1344884/100‑1 (MQ=255)
                                               gTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGt                                                      <  2:939543/100‑1 (MQ=255)
                                               gTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGt                                                      >  2:823560/1‑100 (MQ=255)
                                               gTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCGCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGt                                                      <  1:3034922/100‑1 (MQ=255)
                                                tAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGtt                                                     <  2:3633858/100‑1 (MQ=255)
                                                     tttttATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTGCAGTTAATAGGGTTTAGTGAACGCGGTTaaaaa                                                <  2:1124581/100‑1 (MQ=255)
                                                     tttttATTAACAACGGCTTATTCTAATTACTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTGCAGTTAATAGGGTTTAGTGAACGCGGTTaaaaa                                                <  1:2645865/100‑1 (MQ=255)
                                                       tttATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATa                                              >  2:794649/1‑100 (MQ=255)
                                                       tttATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATa                                              <  2:3709911/100‑1 (MQ=255)
                                                           ttaACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAg                                          >  2:4237999/1‑100 (MQ=255)
                                                           ttaACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAg                                          <  2:500413/100‑1 (MQ=255)
                                                             aacaacGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCTCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGc                                        <  1:2255926/100‑1 (MQ=255)
                                                              acactggCTTATTCTAATGATTTTGTGATGAGCGGCAACGCG‑GGTCGCTGAAATATAACAGTTAATAGTGTTTAGTGAACGCGGTTaaaaa                                                <  1:726741/86‑1 (MQ=255)
                                                              acaacGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCa                                       >  1:327940/1‑100 (MQ=255)
                                                               caacGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCAt                                      >  2:4295333/1‑100 (MQ=255)
                                                                     cTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACggt                                >  2:1035539/1‑100 (MQ=255)
                                                                      ttATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACggtg                               <  2:2483367/100‑1 (MQ=255)
                                                                        aTTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACggtggt                             <  2:1737614/100‑1 (MQ=255)
                                                                         ttCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGgtggtg                            <  2:4344162/100‑1 (MQ=255)
                                                                         ttCTAATTATTTTGGGATTAGCGGCAGCGCT‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGATTAAAAATAAAAGGCATCACggtggt                             <  1:1676784/99‑1 (MQ=255)
                                                                          tCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGa                           >  1:3121535/1‑100 (MQ=255)
                                                                           cTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaa                          >  1:2415346/1‑100 (MQ=255)
                                                                            tAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaat                         <  2:4056552/100‑1 (MQ=255)
                                                                            tAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaat                         <  1:3245964/100‑1 (MQ=255)
                                                                            tAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaat                         <  2:1315405/100‑1 (MQ=255)
                                                                              attattTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGaataa                       >  1:1006866/1‑100 (MQ=255)
                                                                                 attTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGc                    >  1:4183390/1‑100 (MQ=255)
                                                                                      tatttgaGCGGCA‑CGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCtt               >  1:3667250/5‑100 (MQ=38)
                                                                                      gtgATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCtt               >  1:2923845/1‑100 (MQ=255)
                                                                                       atttgaGCGGCA‑CGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCttt              >  1:3937529/4‑100 (MQ=39)
                                                                                       atttgaGCGGCA‑CGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCttt              >  2:3464271/4‑100 (MQ=39)
                                                                                        tttgaGCGGCA‑CGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCATTc             >  1:1428611/3‑100 (MQ=255)
                                                                                        gatgaGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTc             >  1:2205381/1‑100 (MQ=255)
                                                                                        gatgaGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTc             >  1:3308726/1‑100 (MQ=255)
                                                                                        gatgaGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTc             >  2:302193/1‑100 (MQ=255)
                                                                                         ttgaGCGGCA‑CGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCg            >  1:1547337/2‑100 (MQ=255)
                                                                                          tgaGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           <  2:2415357/100‑1 (MQ=255)
                                                                                          tgaGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           <  1:139100/100‑1 (MQ=255)
                                                                                          tgaGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           >  1:3795967/1‑100 (MQ=255)
                                                                                          tgaGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           <  2:3380125/100‑1 (MQ=255)
                                                                                          tgaGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCAGCTTTCgg           >  1:2578332/1‑100 (MQ=255)
                                                                                          tgaGCGGCAGAGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAACAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           <  1:2897156/100‑1 (MQ=255)
                                                                                          tgaGCGGCA‑CGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           >  2:2041427/1‑100 (MQ=255)
                                                                                          tgaGCGGCA‑CGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCgg           >  1:4206164/1‑100 (MQ=255)
                                                                                            aGCGGCA‑CGCGCTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGcc         >  1:1971053/1‑100 (MQ=255)
                                                                                             gcagCAGCGCG‑TGCTGATCAAATATTACAGTTAATAGGGTGTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGc          <  1:1249988/95‑1 (MQ=255)
                                                                                             gCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCa        <  2:355569/100‑1 (MQ=255)
                                                                                             gCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCa        >  2:2616779/1‑100 (MQ=255)
                                                                                              cGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCaa       <  2:1857177/100‑1 (MQ=255)
                                                                                                 cAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGcc    <  2:3929726/100‑1 (MQ=255)
                                                                                                  aGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCg   >  2:3251961/1‑100 (MQ=255)
                                                                                                   gcgcG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCgg  <  1:962606/100‑1 (MQ=255)
                                                                                                   |                                                                                                    
ATAATAGATTACGGGTTGTTCTCATTTTTGTAGGCATAGAGCCTCCTGTAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCG‑TGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCGG  >  NC_000913/2679331‑2679529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑