| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3392342 | NA (NA) | 29 (0.200) +CTACAAACG |
8/160 | NT | NA | noncoding (267/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | NC_000913 | = 3392393 | NA (NA) | intergenic (‑365/+65) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein | |||||
GCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3392269‑3392342‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAACATAACCGTAGGTCGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTTGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTACAAACGGAA < NC_000913/3392393‑3392300 |||||||||| GCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAGCATAACCCTAGGTC > 1:3061078/1‑100 GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATACCCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTG > 1:449436/1‑100 TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGCACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGC > 2:3594100/1‑100 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTaaaaa > 2:4391983/1‑95 GTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTaaaaa > 1:3443673/1‑95 AGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTaaaaaat > 1:258280/1‑93 AGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGAT > 2:288021/1‑100 AGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGAT > 2:1042070/1‑100 AGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGAT > 2:2002060/1‑100 GGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATG > 1:1037704/1‑100 GGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATG > 2:2614132/1‑100 GGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATG > 2:1665172/1‑100 GGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATG > 2:2614962/1‑100 GGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATG > 1:3755657/1‑100 GGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATG > 1:2125132/1‑100 GCCTGATAAGACGCACAGCGTCGTATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGC > 2:2059808/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGC > 2:2784551/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGC > 2:442712/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGC > 1:853336/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGC > 1:2738419/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGC > 1:1186652/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATGC > 2:2185323/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATGC > 2:2294197/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATGC > 2:232933/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATGC > 2:2114042/1‑100 GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATGC > 2:432283/1‑100 CTGATAAGACGCACAGCGTCGCATCAGGCCTACACA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATGCGA > 1:2226367/1‑100 GATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGCGACG > 2:21942/1‑100 GATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATGCGACG > 2:3636199/1‑100 ggcctcgagA‑CGGAACATAACCGTAGGTCGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTTGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTAC < 1:600803/89‑1 aacCGGAACATAACCGTAGGTCGGATAGGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTACAAACcgga < 1:2915240/96‑5 |||||||||| GCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3392269‑3392342‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAACATAACCGTAGGTCGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTTGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTACAAACGGAA < NC_000913/3392393‑3392300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |