BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4137869	NA (NA)	6 (0.040)	4/162	NT	NA	noncoding (81/98 nt)	RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	4441401 =	NA (NA)	6 (0.040)	4/162	NT	NA	noncoding (9/98 nt)	RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 235 total aligned reads displayed.

CAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTG  >  NC_000913/4137770‑4137967

cAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATA                                                                                                     >  2:1892026‑M1/1‑100 (MQ=255)

     tACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGt                                                                                                >  1:2032282/1‑100 (MQ=255)

      aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATGTATTGCAGAGATTGCGTAGGCCTGATAAGCGTa                                                                                               >  2:4254438/1‑100 (MQ=255)

      aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTa                                                                                               <  1:525166/100‑1 (MQ=255)

       cTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAg                                                                                              <  2:612227/100‑1 (MQ=255)

       cTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAg                                                                                              <  1:1405747/100‑1 (MQ=255)

       cTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTCCAGAGACTGCGTAGGCCTGATAAGCCTAg                                                                                              >  1:1855838/1‑100 (MQ=255)

        tGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAgc                                                                                             <  2:2895708/100‑1 (MQ=255)

         ggCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAgcg                                                                                            <  2:1437800/100‑1 (MQ=255)

               gagTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCa                                                                                       >  2:1834480/1‑99 (MQ=255)

                 gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                    <  1:1301488/100‑1 (MQ=40)

                 gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                    <  1:908990/100‑1 (MQ=255)

                 gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                    <  2:4222387/100‑1 (MQ=255)

                 gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                    <  1:25286/100‑1 (MQ=255)

                  tGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATGGCGTAGGCCTGATGcgctacgcttatcagg                                                                                     <  1:1271283‑M1/98‑17 (MQ=255)

                  tGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATGcgctacgcttatcaggcc                                                                                   <  1:3648113‑M1/100‑19 (MQ=255)

                      ggATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATGcgctacgcttatcaggcctacg                                                                               <  2:595770‑M1/100‑23 (MQ=255)

                      ggATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATGcgctacgcttatcaggcct                                                                                  <  2:3938252‑M1/97‑20 (MQ=255)

                      ggATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt                                                                               <  1:1135674/100‑1 (MQ=255)

                        aTGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTg                                                                             <  2:1609802/100‑1 (MQ=255)

                        aTGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTg                                                                             <  1:2410802/100‑1 (MQ=255)

                          gCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGTCTGATAAGCGTAGCGCATCAGGCAATTCTGCg                                                                           <  1:2174173/100‑1 (MQ=255)

                          gCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCg                                                                           <  2:3198465/100‑1 (MQ=255)

                            ggAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGtt                                                                         >  1:1982501/1‑100 (MQ=255)

                            ggAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGtt                                                                         >  2:1358497/1‑100 (MQ=255)

                               gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGATATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCaa                                                                      >  2:3423641/1‑100 (MQ=255)

                                tGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGCTCaaa                                                                     >  2:1134958/1‑100 (MQ=255)

                                 gAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAAc                                                                    >  2:4341423/1‑100 (MQ=255)

                                    cGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTcc                                                                 <  1:1436950/100‑1 (MQ=255)

                                    cGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTcc                                                                 >  2:2158796/1‑100 (MQ=255)

                                     gCCTTATCCGGCCTTCAAAAGCACGCATATTCAATATATTGCAGAGATTGCGTAGGCCTGGTAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt                                                                   >  1:812511/1‑97 (MQ=255)

                                     gCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTccc                                                                <  1:354095/100‑1 (MQ=255)

                                      ccTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCg                                                               >  1:405358/1‑100 (MQ=255)

                                      ccTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCg                                                               >  2:4377669/1‑100 (MQ=255)

                                      ccTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCg                                                               >  2:890980/1‑100 (MQ=255)

                                      ccTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCg                                                               <  1:1692408/100‑1 (MQ=255)

                                       cTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg                                                              <  1:2278562/100‑1 (MQ=255)

                                         tATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAc                                                            <  2:3738867/100‑1 (MQ=255)

                                         tATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAc                                                            <  1:2462432/100‑1 (MQ=255)

                                          aTCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACa                                                           <  1:2576802/100‑1 (MQ=255)

                                          aTCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACa                                                           <  1:1346714/100‑1 (MQ=255)

                                           tCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACaa                                                          >  2:1385382/1‑100 (MQ=255)

                                            ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCggcttgt                                                         <  2:1761228/100‑6 (MQ=255)

                                            ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACCAg                                                         >  2:1947474/1‑100 (MQ=255)

                                              ggCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑cc                                                      <  2:3117542/100‑1 (MQ=255)

                                              ggCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑cc                                                      <  1:327021/100‑1 (MQ=255)

                                              ggCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑cc                                                      >  1:2078672/1‑100 (MQ=255)

                                               gCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCg                                                     >  1:3403037/1‑100 (MQ=255)

                                                ccTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCgg                                                    <  2:1995468/100‑1 (MQ=255)

                                                 cTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCggg                                                   <  2:1023754/100‑1 (MQ=255)

                                                 cTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCggg                                                   <  2:1286219/100‑1 (MQ=255)

                                                 cTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCggg                                                   <  2:2115582/100‑1 (MQ=255)

                                                  tACAAATGCACGCAAATTCAATATATCGCAGCTATTACTTAGGCCTGATAAGCGTAGCGCATGAGTCAATTTTGCGTTCAAACTCCCGGACAAG‑cc                                                      <  1:2883611/96‑1 (MQ=18)

                                                  tACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCgtct                                                  >  2:3386709/1‑97 (MQ=255)

                                                  tACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGa                                                  >  1:2010039/1‑100 (MQ=255)

                                                   aCAATAGCACGCAAATTCAATATATTGCATAGATTGCTTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAATCTCCCGGACAAG‑CCggg                                                   <  1:841052/98‑1 (MQ=18)

                                                   aCAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAg                                                 <  2:700925/100‑1 (MQ=255)

                                                   aCAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAg                                                 >  1:147757/1‑100 (MQ=255)

                                                    cAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGt                                                >  2:1716085/1‑100 (MQ=255)

                                                      aaaGCATGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGgtt                                              >  1:2824755/1‑100 (MQ=255)

                                                      aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGttt                                              >  2:551707/1‑100 (MQ=255)

                                                      aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGttt                                              >  2:295284/1‑100 (MQ=255)

                                                          cACGCAAATTCAATATATTGCAGAGATTGCGTAGCCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGCTTGT‑CCGGGAGTTTgaac                                          <  2:2380883/100‑4 (MQ=17)

                                                          cACGCAAATTCAATATAATGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAg                                          <  1:962270/100‑1 (MQ=255)

                                                            cGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTa                                        >  2:2767703/1‑100 (MQ=255)

                                                             gCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAACCGTAGCGCATCAGGCAATTTTGCGTTCAACCTCCCGGACAAG‑CCGGGAGTTTGGAGTAg                                       >  1:751542/1‑100 (MQ=255)

                                                              cacaTTCAATATATTGCAGAGATTGCGTAGGCCGGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAgg                                      <  1:2307736/97‑1 (MQ=255)

                                                              cAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAgg                                      <  1:3228284/100‑1 (MQ=255)

                                                              cAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAgg                                      <  2:2476367/100‑1 (MQ=255)

                                                               aaaTTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGt                                     >  2:3172207/1‑100 (MQ=255)

                                                                aacttactatatTGCAGAGATTGCGTAGGGCTAATGAGCATACCGCACCAGGCAATTTTGCGTACAAACACCGCGAAAAG‑CGGGGAGTTTGGAGCAggg                                     <  1:1000829/92‑2 (MQ=12)

                                                                    cAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAATCTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTc                                <  1:4168487/100‑1 (MQ=255)

                                                                     aaTATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTcc                               >  1:1647490/1‑100 (MQ=255)

                                                                        atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCAc                            <  1:4271043/100‑1 (MQ=255)

                                                                         tatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCAct                           <  2:328798/100‑1 (MQ=255)

                                                                         tatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCAct                           <  2:909253/100‑1 (MQ=255)

                                                                         tatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGG‑CTTGTCCGGGAGTTTGGAGTAGGTTATTCCCAct                           >  1:4367966/1‑100 (MQ=21)

                                                                          atTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCAcac                          <  2:2987349/100‑3 (MQ=255)

                                                                           ttGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCActct                         <  2:1078252/100‑1 (MQ=255)

                                                                           ttGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCActct                         <  1:2701390/100‑1 (MQ=255)

                                                                            tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCtt                        >  2:779710/1‑100 (MQ=255)

                                                                             gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTg                       >  1:659453/1‑100 (MQ=255)

                                                                             gCAGAGACTGCGTAGGCCTGATAAGCGTAACGCATCAGGCACTTTTGCGCTCCAACTCCCGACCAAG‑CCGCGAGTCTGGCCCAGGTTACTCCCActct                         >  1:3457696/1‑98 (MQ=16)

                                                                              cAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGc                      <  2:691957/100‑1 (MQ=255)

                                                                               agagagTGCGTAGGCCTGATAAGCGTGGCGCATCAGGCAATTTTGCGTTCAAACTTCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCa                     <  1:1017855/100‑1 (MQ=255)

                                                                               agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCa                     <  1:1972042/100‑1 (MQ=255)

                                                                                gagaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCTCTCTTGCAg                    <  2:379074/100‑1 (MQ=255)

                                                                                gagaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAg                    <  1:605081/100‑1 (MQ=255)

                                                                                gagaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAg                    <  1:1892167/100‑1 (MQ=255)

                                                                                 agagTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGGTATGCCCACTCTTGCAgg                   <  1:3369903/100‑1 (MQ=255)

                                                                                  gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAgat                  >  1:2617607/1‑98 (MQ=255)

                                                                                  gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGa                  >  2:4068960/1‑100 (MQ=255)

                                                                                  gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGa                  >  1:3009774/1‑100 (MQ=255)

                                                                                  gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGa                  <  2:36617/100‑1 (MQ=255)

                                                                                      gCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTTTTGCAGGAAACg              >  2:1699949/1‑100 (MQ=255)

                                                                                       cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGc             <  2:1806605/100‑1 (MQ=255)

                                                                                           ggCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGAc         <  2:2032290/100‑1 (MQ=255)

                                                                                           ggCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGAAGGCAACGCTGAc         >  2:2561813/1‑100 (MQ=255)

                                                                                                gATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGCCCGTAc    >  1:4079391/1‑100 (MQ=255)

                                                                                                gATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTAc    >  2:432477/1‑100 (MQ=255)

CAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAG‑CCGGGAGTTTGGAGTAGGTTATTCCCACTCTTGCAGGAAACGCTGACCGTACTG  >  NC_000913/4137770‑4137967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.