| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,971 | C→A | 29.5% | intergenic (‑181/+127) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,971 | 0 | C | A | 29.5% | 553.0 / 251.1 | 276 | intergenic (‑181/+127) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base C (97/97); new base A (76/5); total (174/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.71e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.97e-02 | |||||||||||
Only 100 of 293 total aligned reads displayed.
GGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705873‑3706070 | gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:3560538/1‑100 (MQ=255)gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:1421419/1‑100 (MQ=255) ngAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGGCAAAGTGCGCTTTGTTTATGCCGGATgcgg > 1:606291/2‑100 (MQ=255) aaTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg < 2:895158/100‑1 (MQ=255) tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt > 1:3499661/1‑100 (MQ=255) tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 2:148511/100‑1 (MQ=255) gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 2:271862/100‑1 (MQ=255) gAAGGATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 1:1359184/100‑1 (MQ=255) aaGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTaa < 2:1540494/100‑1 (MQ=255) aGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc > 2:3772074/1‑100 (MQ=255) aGTATTGATGCCGGCTGGCGCTGCACGCAGAGGCACAGCGCCCCCGGGTATACAGATTGTTGACAAGGATAGCTTTGTTTATACGGACTGCGGCGTTaa > 1:1876403/1‑99 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGTAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg < 1:1825075/100‑1 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg < 2:3619328/100‑1 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 2:1947613/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:1662104/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:2558601/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:2894380/1‑100 (MQ=255) ggATGGCGCTGTACGCAGAGGCACAGCGCCACCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:1011624/100‑1 (MQ=25) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:1316653/100‑2 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:4163479/99‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:552468/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 2:2459558/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTCATCCGGCCTAC‑aa < 1:2714990/100‑1 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 1:3112902/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 1:1625780/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 1:2884159/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTAGGCCGGATAAGGCGTTAACGCCGCATCCGGcataaacaaa < 2:4276910/100‑10 (MQ=21) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 2:4015599/99‑1 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:437807/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:410782/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:3776775/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:2999329/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:1553579/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:2124495/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:2402383/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa < 1:1556991/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc < 1:1349932/100‑1 (MQ=255) cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACa < 2:1835161/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:3730608/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGaa > 1:1493618/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAAATTGCAGaa > 2:3682449/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑CAAATCGTGCAAATTCAATACATTGCAGAAttt > 2:2488582/1‑99 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑Gt > 1:2812120/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGc < 2:3929540/100‑1 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGc > 2:2514801/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGcc < 1:867488/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGcc > 2:2644443/1‑100 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGcc < 1:2013523/99‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTg > 1:2002146/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGAt < 1:259877/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATa < 2:1672650/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCgg > 1:4209601/1‑100 (MQ=255) ctcTTTGTTTATGCCAGATGCGGCTTCAACGTCTTATCCTGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAg < 1:407485/98‑1 (MQ=17) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATATGCGGAgc < 2:2314723/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAgcg > 1:532550/1‑100 (MQ=255) cTTTGTTTATGCCGAATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCTCGCAAATTCAATACATTGCCGAATTT‑‑‑TC‑‑GTAGGGCCGATAAGccg > 1:3558499/1‑94 (MQ=17) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:2258535/100‑1 (MQ=255) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAGTTTAT‑‑‑TG‑‑GTAGGCCTGATAAGCGCAGCGCAt > 2:449426/8‑100 (MQ=21) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGGAGTT‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:1251666/8‑100 (MQ=21) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:1471074/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:977857/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:3407641/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:1127174/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:2281558/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:754853/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCA‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:3657391/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCAAGATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1053409/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCAGGAAAC‑‑‑AC‑‑GTAGGCCTGATAAGCGAAGCGCATCAg > 2:4147909/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 1:1720797/5‑100 (MQ=18) taggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGCAGAAACC‑‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:4184301/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCAATCTCC‑‑‑GT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1048740/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAAACTTTGCAAATTCAATATATTGC‑‑AATCT‑‑‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:3139000/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 2:93083/1‑100 (MQ=255) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATCGATCC‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2767858/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGGAGTT‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1335584/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGGAGTT‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1998899/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCAACCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCAGAGATT‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2673004/3‑100 (MQ=17) tGCCGGATGCGGCGTTAACTACATATCCGGCCTAC‑AAAATCGAGCAAATTCAATACATTGCAGAACTT‑‑‑TC‑‑GTACGCCTGATAAGCGAAGCGCAACAGGc > 1:3194132/1‑99 (MQ=17) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:519332/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:3325062/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:1295317/1‑100 (MQ=255) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGGACCA‑‑‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3323310/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAGTTTAT‑‑‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:2019798/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAGTTTAT‑‑‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:2243457/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACCATCC‑‑‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2437896/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACCATCC‑‑‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:753226/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCAGGAGCT‑‑‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3464451/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCAGGAGCT‑‑‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:63589/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑AATCT‑‑‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2769529/2‑100 (MQ=18) gtcGGATAAGGCGTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCAGGAACG‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCCTCAGGcca > 1:2146003/3‑98 (MQ=21) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAGAAACC‑‑‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:3923365/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑AATTCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:3042605/1‑100 (MQ=21) gCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAATTTCAATATATTGCAGAGATT‑‑‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:3056236/1‑99 (MQ=14) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTGGGCTCC‑‑‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:4198592/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCAGTTTAT‑‑‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:4355208/1‑99 (MQ=25) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACCATCC‑‑‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1085725/1‑99 (MQ=21) cggctacggcgTTAACGCAGCATCCGGACTAC‑ACAATCGTGCAAATTCAATACATTGCAGACTTT‑‑‑TC‑‑GTCGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:1805084/7‑100 (MQ=17) ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt < 1:3231395/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttttttt > 1:685449/1‑96 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:3437667/1‑100 (MQ=255) | GGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGAATTT‑‑‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCT > NC_000913/3705873‑3706070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |