| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 40.0% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 40.0% | 346.7 / inf | 332 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (106/93); new base C (126/6); total (233/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.15e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.38e-04 | |||||||||||
Only 100 of 340 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 | ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:1117413/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:2558601/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:2894380/1‑100 (MQ=255) ggATGGCGCTGTACGCAGAGGCACAGCGCCACCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:1011624/100‑1 (MQ=25) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:522833/100‑1 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:62179/100‑1 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTCATCCGGCCTAC‑aa < 1:2714990/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 1:3445655/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt > 2:1259397/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTAGGCCGGATAAGGCGTTAACGCCGCATCCGGcataaacaaa < 2:4276910/100‑10 (MQ=21) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:437807/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:3665069/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:1842167/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:300097/100‑1 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt > 1:2859126/1‑100 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt < 1:2630240/100‑1 (MQ=255) cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACa < 2:1835161/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 1:1619533/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:922712/1‑100 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg < 2:2727898/100‑1 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga > 1:1415152/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga‑a > 1:1493618/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga‑a > 2:1548510/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑CAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑t‑‑‑t > 2:2488582/1‑99 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑g < 2:2125560/100‑1 (MQ=255) aGATTGTGGACAAAGTGGGGGTTGTTTATGCCGGATGGGGGGTTAACGCCTTATCCGGCGTAC‑AAAATCGTGCAAATTCAATACATTGGA‑GA‑At‑t‑‑‑t > 1:4036073/1‑96 (MQ=14) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTa > 1:4115884/1‑100 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTa < 1:3733186/100‑1 (MQ=255) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAgg > 2:975526/7‑100 (MQ=18) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGc > 2:2514801/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGc < 2:3929540/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGcc < 2:1356045/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGcc < 1:867488/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTg > 1:2002146/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTg < 2:4063820/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCACATTCACTACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCt > 1:1551668/1‑98 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGa < 1:3223997/100‑1 (MQ=255) aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATaa > 1:254817/1‑100 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGaaaa > 1:1657215/1‑98 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 2:2403523/100‑1 (MQ=255) gattttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAg < 2:1141612/97‑1 (MQ=255) cgcTTTGTTTACGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑ACAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAg < 1:2811269/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATATGCGGAgc < 2:2314723/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:532550/1‑100 (MQ=255) cTTTGTTTATGCCGAATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCTCGCAAATTCAATACATTGCC‑GA‑AT‑T‑‑‑TTC‑‑GTAGGGCCGATAAGccg > 1:3558499/1‑94 (MQ=17) ctttgtgggtcGGATAAGGCGTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCA‑GG‑AA‑C‑‑‑GAT‑‑GTAGGCCTGATAAGCGTAGCGCa > 1:2015075/11‑100 (MQ=21) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCAt > 2:449426/8‑100 (MQ=21) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:3691175/1‑100 (MQ=255) tGTTTATGCCGGAGGCTGCGTTAACGACTTACCCGGCATAC‑AAAATCGTGCCAATTCACTACATTGCA‑GA‑AT‑T‑‑‑TGC‑‑GTAGGCCTGATAAGCGGAgcg < 1:3117850/97‑1 (MQ=17) cttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑A‑TA‑T‑‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:4157011/8‑100 (MQ=18) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:754853/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:3407641/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAACATATTGCA‑‑A‑TTCT‑‑‑CTT‑‑GTAGGCATGATAAGAGTAACGCATCAg > 1:2275138/5‑100 (MQ=12) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:3738793/5‑99 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCA‑AG‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1053409/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg > 1:1720797/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑AT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:3139000/4‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCCTTGCGAATTCAATATATTGTATGG‑AA‑A‑‑‑TTC‑‑‑‑AGGCCTGATAAGCGTAGCGCATCAGGct > 2:1468175/3‑99 (MQ=25) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCA‑AG‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1750264/3‑100 (MQ=14) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑AT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:21078/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2828031/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1998899/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCAACCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GA‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2673004/3‑100 (MQ=17) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:3325062/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:1295317/1‑100 (MQ=255) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1321910/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:4007534/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:657558/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:753226/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3386122/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑AT‑CT‑C‑‑‑CGT‑‑GTAGTCCTGATAAGCGTAGCGCATCAgg > 1:4079169/2‑98 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:4197984/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:665223/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCA‑AT‑CT‑T‑‑‑CTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaa > 2:4168318/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1085725/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATAGCA‑GA‑GA‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:3081300/1‑99 (MQ=17) cgggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:2978717/9‑98 (MQ=17) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:4344735/9‑98 (MQ=17) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt < 1:3007260/100‑1 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2759637/1‑98 (MQ=18) cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:222894/8‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2073193/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:132579/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑A‑AT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 2:2369838/7‑97 (MQ=21) ggataaggcgTTCACGCCGCATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTGCA‑GA‑GA‑T‑‑‑GGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:3475694/7‑100 (MQ=14) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3068104/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GG‑CT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2413417/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:3560582/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑G‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttta > 2:1297258/7‑98 (MQ=18) ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:1594833/1‑100 (MQ=255) ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt < 2:1972368/100‑1 (MQ=255) taaggcgTTCACGCCGCATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTGCA‑GA‑GA‑T‑‑‑GGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCATTtttgc > 2:4205153/4‑100 (MQ=14) tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 2:1482304/100‑1 (MQ=255) ggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCA‑AG‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgctcgcatg > 1:326761/1‑90 (MQ=18) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:224091/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:3655507/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:1043851/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:1740001/1‑100 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 2:2639548/100‑1 (MQ=255) tATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt < 1:4307040/100‑1 (MQ=255) | GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |