| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1570970 | NA (NA) | 21 (0.180) | 12/168 | NT | 100% | coding (1076/1401 nt) | gadB | glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | = 1570988 | 0 (0.000) | coding (1058/1401 nt) | gadB | glutamate decarboxylase B, PLP‑dependent | |||||
ATCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCAGATAAGCGGCAACCTGGTAAGAGGCGTTCTGTACTTTGGTATAGCCTTCACGACCGAGGCGCAGGAATTCATAGTACTGTG > NC_000913/1570885‑1571069 | aTCTTCTCCATCTTTCAGTTTGAAGCAAACCGCCCGGATGCCTTCGTCCGGGCGACCCGTACATATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCC > 1:2227225‑M2/1‑100 (MQ=255)aTCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑GTTTCATCC > 2:500447‑M2/1‑100 (MQ=255)aTCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCC > 2:2801066‑M2/1‑100 (MQ=255)aTCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCC > 2:1228064‑M2/1‑100 (MQ=255)aTCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCC > 2:3061918‑M2/1‑100 (MQ=255) tCTTCACGATCATTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCG < 1:1798465‑M2/100‑1 (MQ=255) tCTTCACCTTCTTTCAGTTTGAAGCAAAGCGCTGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGCTTCGCG‑ATTTGATCCG < 1:1439705‑M2/100‑1 (MQ=255) tCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCG > 2:3000544‑M2/1‑100 (MQ=255) tCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCATTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCC < 2:281354‑M2/99‑1 (MQ=255) cTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGC < 1:172625‑M2/100‑1 (MQ=255) cTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGC < 1:2208023‑M2/100‑1 (MQ=255) ttCACCATCTTTCAGTTTGAGGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCC < 1:2084894‑M2/100‑1 (MQ=255) ttCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCC > 2:923300‑M2/1‑100 (MQ=255) ttCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCC < 2:637350‑M2/100‑1 (MQ=255) tCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCA < 1:343492‑M2/100‑1 (MQ=255) tCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCA < 2:2104875‑M2/100‑1 (MQ=255) cACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCAn > 1:3327053‑M2/1‑99 (MQ=255) agcatCTTTCAGTTTGAAGCAAACCGCCGTGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCC > 1:1513294‑M2/3‑97 (MQ=255) tttGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCGGATGAAATC‑GCCAaactggggccgtat > 2:3379356‑M2/1‑86 (MQ=255) ggATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑GATGAAATCGCCAaactggggccgtatgagttcatctgtacggg > 1:2131856‑M2/1‑69 (MQ=255) gCCCCAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaa < 1:1229771‑M2/100‑74 (MQ=255) gCCCCAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaa < 2:1755233‑M2/100‑74 (MQ=255) gCCCCAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaa < 1:3061246‑M2/100‑74 (MQ=255) ccccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaa < 1:1145320‑M2/100‑75 (MQ=255) ccccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaa > 2:1145324‑M2/1‑26 (MQ=255) cccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaag < 2:1675297‑M2/100‑76 (MQ=255) cccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaag < 2:1125001‑M2/100‑76 (MQ=255) cccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaa < 1:2648054‑M2/99‑75 (MQ=255) ccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaaga < 2:3301732‑M2/100‑77 (MQ=255) ccAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaaga < 2:789250‑M2/100‑77 (MQ=255) cAGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagat < 2:1919977‑M2/100‑78 (MQ=255) aGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatg < 2:2614464‑M2/100‑79 (MQ=255) aGTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatg < 2:1346963‑M2/100‑79 (MQ=255) gTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatgg < 2:1744839‑M2/100‑80 (MQ=255) gTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatgg < 2:241486‑M2/100‑80 (MQ=255) gTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatgg < 2:2226089‑M2/100‑80 (MQ=255) gTTTGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatgg < 2:561504‑M2/100‑80 (MQ=255) ttGGCG‑ATTTCATCCGCCAaactggggccgtatgagttcatctgtacgggtcgcccggacgaaggcatcccggcggtttgcttcaaactgaaagatggtg < 2:3040589‑M2/100‑82 (MQ=255) | ATCTTCACCATCTTTCAGTTTGAAGCAAACCGCCGGGATGCCTTCGTCCGGGCGACCCGTACAGATGAACTCATACGGCCCCAGTTTGGCG‑ATTTCATCCGCCAGATAAGCGGCAACCTGGTAAGAGGCGTTCTGTACTTTGGTATAGCCTTCACGACCGAGGCGCAGGAATTCATAGTACTGTG > NC_000913/1570885‑1571069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |