| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,984 | T→G | 29.9% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 29.9% | 352.6 / 186.2 | 188 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (69/63); new base G (49/7); total (118/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.67e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.66e-02 | |||||||||||
Only 100 of 192 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705885‑3706082 | tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:281038/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:2739913/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:2684643/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc < 1:2782064/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:2865785/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:984871/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:230048/100‑1 (MQ=37) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTATGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:1018245/100‑1 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:3297967/100‑3 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:602555/100‑3 (MQ=37) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aa > 2:3311698/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATc > 1:3209056/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg < 2:276078/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 2:3148290/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 1:2910478/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 1:2990643/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 1:3030007/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCa > 2:3006712/1‑100 (MQ=255) agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCaa < 2:2808960/100‑1 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCaa < 2:2148281/99‑1 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCAGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCaaa > 2:512624/1‑100 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt > 2:2543383/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt < 1:1981949/100‑1 (MQ=255) aGCGCCACCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGTCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATa < 2:362836/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATAc < 1:406756/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATAc < 1:3554152/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAtt < 2:1750981/100‑1 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc < 2:406812/100‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑t > 1:1918168/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑tt < 2:1780143/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑Gt < 2:2162275/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTa > 1:2973093/1‑100 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAgg > 1:494795/1‑100 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCt < 1:2013829/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTg > 1:75724/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTg < 1:2940/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCTTTCTCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATa < 1:2492857/100‑1 (MQ=255) aGTGCGCTTTGGTTATGCCGTATGCGGCGTTAACGCCTTAACCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAg < 1:2134437/99‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCg > 2:3193447/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCgg < 2:2713378/100‑1 (MQ=255) ctcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAg < 1:533548/98‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAg > 1:599879/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAgc < 1:2422677/100‑1 (MQ=255) tgatttgtaggCCGGATAACGCATTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑TT‑AT‑‑GTAGTCCTGATAAGCGTAgcgc > 1:1612746/11‑100 (MQ=18) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAgcg > 2:72301/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑CC‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:1442898/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑‑AC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑TA‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:3109539/7‑100 (MQ=17) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:1136920/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:2466740/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:1421305/100‑1 (MQ=255) ngtaggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑‑AC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑AC‑AC‑‑GTAGGCCTGATAAGCGAAGCGCATCa > 2:163321/6‑100 (MQ=18) taggCCGGATAAGGCGTTTACGTCGCATCCGGCCT‑‑AC‑AAAAGAGTGCAAATTCAATACATTGCA‑TG‑GG‑CC‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1260320/4‑100 (MQ=17) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑A‑AT‑TC‑TCTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2022583/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 1:788065/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCC‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2724005/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑A‑TA‑TG‑AC‑‑GTAGGCCTGATAAGCGTAGCGCaagatcgg > 2:2526873/3‑93 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGCA‑AT‑CT‑CC‑GT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:955032/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCAT‑‑AC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑AT‑CC‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1950722/3‑100 (MQ=21) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:3083606/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATCCAATACATCGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGACAAGCGGAGCGCATCAGGCa > 1:694511/1‑100 (MQ=255) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AG‑CC‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:623107/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑CC‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3343404/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑AT‑CT‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1269527/2‑100 (MQ=18) gtcggataaggcgTTCACGCCGCATCCGACCC‑‑AC‑AAAGTCTTGCAAAATCAATAAATTGCAGGA‑AC‑GA‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:152731/10‑99 (MQ=21) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAACTTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:3389846/1‑98 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1659209/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1510454/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCC‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:2264169/1‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCC‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:1808540/1‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑CC‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1643232/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑TC‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2846143/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CA‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:2365248/1‑99 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CA‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:334901/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCATGAAAATTCAATACATTGCA‑AG‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacg > 2:1411698/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑AT‑CT‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaat < 2:2101170/92‑3 (MQ=18) cggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑CC‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:666677/8‑100 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt < 2:1825694/100‑1 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑AT‑CCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:1348226/7‑98 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑CC‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:437911/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑CC‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 2:870255/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑CC‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 1:2585068/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑AC‑AC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAgttt > 1:1997370/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑TT‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 1:327839/7‑98 (MQ=21) gataaggcgTTTACGCCGCATCCGGCATAAAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑CC‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:3251720/6‑100 (MQ=14) gataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTGTGCAAATTCAATCAATTGCA‑GG‑AA‑AC‑AC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAgttt > 2:849191/6‑99 (MQ=17) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATTCATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:1380178/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1101177/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:1019939/1‑100 (MQ=255) ggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:2890662/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGTCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt < 2:2507712/100‑1 (MQ=255) tctAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:1201389/98‑1 (MQ=255) gTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:1228273/1‑100 (MQ=255) tAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:2317624/1‑100 (MQ=255) aaCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcaga > 2:1201396/1‑97 (MQ=255) aaCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:1349859/1‑100 (MQ=255) aCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 2:2956892/1‑100 (MQ=255) aCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 2:940539/1‑100 (MQ=255) cGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:3421840/99‑1 (MQ=255) gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 1:1948386/1‑100 (MQ=255) gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:2216038/1‑100 (MQ=255) | TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705885‑3706082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |