New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3392342NA (NA)13 (0.130)
+CTACAAACG		 6/160 NT NA noncoding (267/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
?NC_000913 = 3392393 NA (NA)intergenic (‑365/+65) tldD/yhdP putative peptidase/DUF3971‑AsmA2 domains protein

TAGGCCTGATAAGACGCACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3392309‑3392342
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAACATAACCGTAGGTCGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTTGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTAC  <  NC_000913/3392393‑3392308
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TAGGCCTGATAAGACGCACAGCGTCTTATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGA                               >  1:200614/1‑100
 AGGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTaaaaaat                               >  2:508146/1‑93
  GGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTaaaaaatc                              >  1:2172564/1‑92
  GGCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATG                             >  2:1660138/1‑100
   GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGC                            >  1:1132384/1‑100
   GCCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGC                            >  1:194242/1‑100
    CCTGATAAGACGCACAGCGTCTTATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGCG                           >  2:537837/1‑100
    CCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTaaaaaatcc                             >  2:82255/1‑90
    CCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGCG                           >  1:261611/1‑100
    CCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAAGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGCG                           >  1:475630/1‑100
    CCTGATAAGACGCACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAAGTCGGATAAGGAGTTTACGCCGCATCCGACAGCCGTTGCCTGATGCG                           >  1:863008/1‑100
                CACAGCGTCGCATCAGGCCTACAAA‑CGGAACATAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCTGTGCGTC               >  2:1091182/1‑100
                       tgttATCAGGCCTAGAGA‑CCGAACATAACCGTAGGTCGTATAGGGCGTTGACGCCGCATCCGGCAGCCGTTGCCTGATGCGACGCTGTGCGTCTTATC          <  2:2839498/94‑1
                                GCCTACAAC‑CGGAACATAACCGTAGGTCGGATAGGGCGTTTACGCCGCATCCGGCAGCCGTTGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTAC  <  2:2411618/97‑1
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TAGGCCTGATAAGACGCACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3392309‑3392342
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAACATAACCGTAGGTCGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTTGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTAC  <  NC_000913/3392393‑3392308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.