| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,978 | A→C | 23.2% | intergenic (‑188/+120) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,978 | 0 | A | C | 23.2% | 323.2 / 93.5 | 154 | intergenic (‑188/+120) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base A (52/60); new base C (29/2); total (92/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.33e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.64e-02 | |||||||||||
Only 100 of 158 total aligned reads displayed.
GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077 | gAAGTATTGCTTCCGGATGGCGCTGCACGCAGAGGCCCAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGAATGCGGCGTTa > 2:1786103/1‑100 (MQ=255) aaGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTaa > 2:773845/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 2:250664/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:1533050/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:2312421/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt > 1:2293182/1‑100 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:2611395/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:1707229/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2994121/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 2:697540/100‑1 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc < 2:1827955/100‑1 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:1381441/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCAGGc > 1:670220/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGACGTTAACGCCTTATcc > 1:3015248/1‑97 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:2701208/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:19662/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGCTAACGCCTTATCCGGcc > 2:75192/1‑100 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:797027/100‑3 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:807423/100‑3 (MQ=37) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa < 2:139529/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGAATGCGGCGTTAACGCCTTATCCGGCCTACa > 1:1012399/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGTTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaa < 1:257249/100‑1 (MQ=255) cgcTGCACGCAGAGGCACAGCACCACCGGGTATACAGATTGTTGACAAACTGCGCTTTGTTTATGCCGGATGCCGCGTTAACGCCTTATCCGTCCTACaa > 2:2615250/1‑100 (MQ=25) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaacaaag < 2:2842761/100‑11 (MQ=21) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAAGCCTTATCCGGCCTACAAAATCg > 1:468003/1‑100 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGt > 1:1186042/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGt > 1:1415153/1‑99 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg > 2:1958097/1‑100 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCaaa > 2:57883/1‑100 (MQ=255) agGCACAGCGCCACCGGGTATATAGTTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAAt < 1:2117489/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTc > 2:1190205/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAt < 2:1050109/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAt < 2:326091/99‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATAc < 2:45238/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCAGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAt > 1:1493294/1‑100 (MQ=255) ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCa < 2:1364976/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑g < 2:499872/100‑1 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGACCTACAAAATCGTGCAAATTCAATACATTGCA‑Gaa > 1:1141105/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAtt‑‑tt > 1:986737/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATCACGGATGCAGCGTTAACTCCTTATCCGGCCTACAAAATCGTGCAAATTCATTACATTGCA‑GAAtt‑‑tt < 2:85273/100‑1 (MQ=17) taCAGATTGTTGAAAAAGTGCGCTTTGTTTATGCCGGACGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAtt‑‑tt > 2:1871446/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑g > 1:2857584/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑g < 2:2293156/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑Gt > 1:701618/1‑100 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCATATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTa < 1:1843893/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGTTTTATCCTGTTTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGcc < 1:983872/100‑1 (MQ=18) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTATGCCt > 2:1931382/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGa > 2:1712624/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCAGGATGCGGCGTTAAAGCCTTATCAGGCATACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGAt > 2:2140109/1‑100 (MQ=18) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGc > 1:2827266/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCgg < 1:330353/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATCAGCGGa > 2:1217667/1‑100 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAg > 1:587145/1‑100 (MQ=255) cgcTTTGTTGATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAg < 2:2570162/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc > 2:373331/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 1:405163/99‑1 (MQ=255) tttgtaggCCGGATAAGTCGTTCACTCCGCATCCGGCCTACAAAAGCACGCAAATTCAATATATTACA‑GAGAT‑‑TGC‑‑GTAGGCCTGATAAGCGTAg > 2:1462092/8‑95 (MQ=11) tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAACATATTGCA‑ATTCT‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:2836239/8‑100 (MQ=18) tGTTTCTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAAT‑‑TTC‑‑GTACGCCTGATAAGCGGAgcgc > 2:1938451/1‑98 (MQ=255) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAATGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:1671444/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTTTGCAAATTCAATATATTGC‑‑‑AATC‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATc > 2:2399942/7‑100 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCTTGCAAATTCAATACATTGCA‑GAAAT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 1:1652348/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GGATT‑‑TTC‑‑GTAGGCCTGATCAGCGGAGCGCATc < 1:2044564/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCA‑TGGGC‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:1815373/6‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑GGAGC‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:3020255/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGAT‑CGATC‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:3026071/4‑100 (MQ=21) ggccagataaggcgTTCACGCCGCATCCGGCCTACAAAACTTTGCAAATTCAATATATTGC‑‑‑AATC‑‑TCCGTGTAGGCCTGACAAGCGTAGCGCATCAGGCa > 2:2877078/11‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑GAAAC‑‑CCT‑‑GTAGGCCGGATAAGCGTAGCGCATCAGGCa > 2:2050239/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:509184/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGAT‑CGATC‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1106044/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCA‑GGGAC‑‑TAT‑‑GTAGACCTGATAAGCATAGCGCATCAGGCa > 1:1212855/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCA‑GAGAC‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 1:401355/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCA‑GGATA‑‑CGT‑‑ATAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:321438/2‑100 (MQ=17) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:370551/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1233024/1‑100 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACACAAACATGCAAATTCAATAGATTGCA‑GAGAT‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:25540/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCA‑‑ATAT‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcgat > 1:494082/1‑97 (MQ=21) ccggataaggcgTTTACGCCGCATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCA‑‑ATTCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 1:449408/9‑99 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTACGAAATCGTGCTAATTCAATATATTGTG‑GGCTC‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:945169/9‑98 (MQ=21) ccGGATCCGGCGTTAACGCCTTATCCAGCCTACAAAATTGTGCAAAATCAATTGATTGCA‑CAGCT‑‑AGC‑‑GTAGGCCTGATGCGCTACGCTCATCAGGc < 2:1483766/97‑1 (MQ=18) cggataaggcgTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGCA‑CCATC‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:1357700/8‑97 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑GAAAC‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1458984/7‑100 (MQ=18) ggataaggcgTTCACGCCGCGTCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GGTTA‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 1:2580452/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAGATCGTGCAAATTCAATATATTGCA‑TGAGC‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1559778/7‑100 (MQ=14) ggataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:756655/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑GGAGC‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:3034549/7‑99 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑GGAGT‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 1:1066030/7‑98 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAACG‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 2:2269240/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCATAC‑AAATCATGCAAATCCAAAATATTGCA‑GGAGA‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGACAttta > 1:2756742/7‑98 (MQ=18) gataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GAGTT‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 2:2192871/6‑100 (MQ=17) aTGCGGGGTTAACTCCTTATCCGGCATACAAAATGGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTTATAAGCGGAGTGCATCAGGGATTtttg < 2:1270139/100‑1 (MQ=18) gcggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc > 1:895262/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:2913962/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2748791/1‑100 (MQ=255) ggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 1:1614734/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 2:636789/1‑100 (MQ=255) ttAACGCCTTATCCGGCCTACAAAATCGTGTAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2555109/98‑1 (MQ=255) ttAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:475307/100‑1 (MQ=255) tAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc > 2:1710077/1‑99 (MQ=255) aaCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:2196911/1‑100 (MQ=255) | GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |