| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,073,307 | Δ1 bp | coding (705/1149 nt) | rutA ← | pyrimidine oxygenase, FMN‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,073,305 | 0 | A | . | 98.6% | 624.3 / 1.0 | 140 | coding (707/1149 nt) | rutA | pyrimidine oxygenase, FMN‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base . (79/59); total (80/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
Only 100 of 145 total aligned reads displayed.
CGTCGGTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGGCGCAG > NC_000913/1073207‑1073400 | cgtcgGTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGaa > 2:634785/1‑100 (MQ=255) gtcgGTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATGCGCGCAGCGGTCGGGTCGaag > 1:349928/1‑99 (MQ=255) tcgGTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGaagc < 2:2835739/100‑3 (MQ=255) tcgGTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGGCGGGGCGaagc > 1:2121309/1‑98 (MQ=255) ggTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGaagccg > 1:2955423/1‑96 (MQ=255) gTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGt > 2:132888/1‑100 (MQ=255) tttCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTg < 2:2870211/100‑1 (MQ=255) ttCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTgg < 1:2300636/100‑1 (MQ=255) tCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTggg > 1:7700/1‑100 (MQ=255) tCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTggg < 2:252925/100‑1 (MQ=255) tCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTggg < 1:1419317/100‑1 (MQ=255) cATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGgt > 1:1625494/1‑100 (MQ=255) aTCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGgtg < 2:3127615/100‑1 (MQ=255) cGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTa > 1:2253857/1‑100 (MQ=255) cGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTa < 1:2119036/100‑1 (MQ=255) ggCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTAt > 2:3295696/1‑100 (MQ=255) gCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTAtt > 1:2046923/1‑100 (MQ=255) aaTCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTAttt < 1:3435378/99‑1 (MQ=255) aTCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTAc > 2:1952339/1‑100 (MQ=255) aTCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGACTGTTTCATCCGCGCCGCGGACGGGGCG‑CAGCCGTGGGTGTATTTAc > 1:2070712/1‑100 (MQ=255) aTCACCATAAACAACACATAAGAGCCAACGTCGCGTCCCGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTAc < 1:2587813/100‑1 (MQ=255) cACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGc > 1:3381081/1‑100 (MQ=255) aCCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGcc > 1:3383903/1‑100 (MQ=255) aCCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGcc > 2:1642181/1‑100 (MQ=255) aCCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGcc < 1:161638/100‑1 (MQ=255) aCCATAAACAACACATAAGAGCCAACGTCGCGGCCGGTTTGCTCGGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGcc < 1:2774106/100‑1 (MQ=255) aTAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCttt > 2:1401399/1‑100 (MQ=255) tAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTg > 1:3080519/1‑100 (MQ=255) aaaCAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGc > 1:2682772/1‑100 (MQ=255) aacaacACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCttgccg < 1:2387552/100‑5 (MQ=255) aacaacACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGcc > 2:3286591/1‑100 (MQ=255) acacATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGaa > 1:3146900/1‑99 (MQ=255) cacaTAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTACATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAAc < 1:2178466/100‑1 (MQ=255) caTAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGCGGGTGTATTTACGCCTTTGCCAAAACAg > 1:161764/1‑100 (MQ=255) aTAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGa > 2:771140/1‑100 (MQ=255) aTAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGa > 2:345708/1‑100 (MQ=255) tAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGaa > 2:1060882/1‑100 (MQ=255) aaGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAg < 1:482188/100‑1 (MQ=255) aaGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAg < 2:2633444/100‑1 (MQ=255) gagCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGtt < 1:1095207/100‑1 (MQ=255) gagCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGtt > 2:1296072/1‑100 (MQ=255) agCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTg < 1:150625/100‑1 (MQ=255) gCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGa < 2:3381133/100‑1 (MQ=255) gCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGa < 2:2539875/100‑1 (MQ=255) ccAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGaa > 1:2582192/1‑100 (MQ=255) aaCGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGCTCGGGGCG‑AAGCCGTGGGTGTATCTACGCCTTTGCCGAAACACAAgatccacc > 2:3119403/1‑93 (MQ=255) gTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCgg < 1:2172983/100‑1 (MQ=255) gTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCgg < 1:1705964/100‑1 (MQ=255) gTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCgg < 2:132470/100‑1 (MQ=255) gTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCgg < 2:2682814/100‑1 (MQ=255) tCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGc < 1:199299/100‑1 (MQ=255) tCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGc < 2:123287/100‑1 (MQ=255) cgcgTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCa < 2:1134603/100‑1 (MQ=255) gcgTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCAt > 1:1035476/1‑100 (MQ=255) gcgTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCAt < 2:865497/100‑1 (MQ=255) cgTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑ACGCCGTGGGTGTATTTCCGCATTTGCCGAACCAGAAGTTGCAATCGGCATa > 1:1717335/1‑100 (MQ=255) cgTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATa > 2:927593/1‑100 (MQ=255) cgTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATa > 2:1239809/1‑100 (MQ=255) gTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATAc > 2:2273073/1‑100 (MQ=255) tCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATAcc < 2:103219/100‑1 (MQ=255) ccGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCg > 2:2335554/1‑100 (MQ=255) cGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCgg > 2:959731/1‑100 (MQ=255) cGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCgg > 1:511785/1‑100 (MQ=255) cGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGCGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCgg > 1:3075495/1‑100 (MQ=255) ggTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCggg > 1:242353/1‑100 (MQ=255) ggTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGGGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCgg > 1:3033279/1‑99 (MQ=255) gTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTCCGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGc > 1:2434213/1‑100 (MQ=255) tttGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCg < 2:182676/100‑1 (MQ=255) ttGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCgg < 1:1947193/100‑1 (MQ=255) ttGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCg < 1:3346729/99‑1 (MQ=255) gCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGgag < 2:362105/100‑1 (MQ=255) gCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGgag > 1:3319260/1‑100 (MQ=255) ctctGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCTGGCGgaga > 1:1112660/1‑100 (MQ=255) ctctGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGgaga > 1:2426961/1‑100 (MQ=255) gCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGc > 2:3224283/1‑100 (MQ=255) gCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGc > 1:1341831/1‑100 (MQ=255) ggCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCa > 2:1148855/1‑100 (MQ=255) ggCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCa < 2:1398612/100‑1 (MQ=255) gCCTGTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCAt < 2:3183323/100‑1 (MQ=255) cttccgatctcgcgCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGc < 2:88713/90‑1 (MQ=255) gTTTCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCa > 2:956529/1‑100 (MQ=255) ttCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAg > 1:125823/1‑100 (MQ=255) tCATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCg < 2:1515670/100‑1 (MQ=255) cATCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGt > 1:1031021/1‑100 (MQ=255) cATCCGCGCAGCGGCCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGt > 1:2801527/1‑100 (MQ=255) aTCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTc > 1:2234472/1‑100 (MQ=255) tCCGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCg < 2:3351318/100‑1 (MQ=255) ccGCGCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGc > 1:833172/1‑100 (MQ=255) cgcgCAGCGGTCGGGGCG‑AAGTCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCt > 2:1502736/1‑100 (MQ=255) cgcgCAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGcagatcggaag > 1:88712/1‑90 (MQ=255) cgcAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCttt > 2:3053109/1‑100 (MQ=255) gcAGCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTg < 2:3457791/100‑1 (MQ=255) gCGGTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGccc < 2:606845/100‑1 (MQ=255) cGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGTAGAACGCCATGCCAGCGTCGCTTTGcct < 1:498585/100‑2 (MQ=255) ggTCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCgg < 1:1774399/100‑1 (MQ=255) tCGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGgcg < 1:1960670/100‑1 (MQ=255) cGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGgcgc > 1:2708740/1‑100 (MQ=255) cGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGgcgc > 1:1121371/1‑100 (MQ=255) cGGGGCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCCGCGAACGCCATGCCAGCGCCGCTTTGCCCGgcgc < 1:90550/100‑1 (MQ=255) gggCG‑AAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGGCGCAg < 1:1803905/100‑1 (MQ=255) | CGTCGGTTTCATCGGCAATCACCATAAACAACACATAAGAGCCAACGTCGCGTCCGGTTTGCTCTGCGGCCTGTTTCATCCGCGCAGCGGTCGGGGCGAAAGCCGTGGGTGTATTTACGCCTTTGCCGAAACAGAAGTTGAAATCGGCATACCGGGCGGAGAACGCCATGCCAGCGTCGCTTTGCCCGGCGCAG > NC_000913/1073207‑1073400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |