| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,037,333 | 0 | T | . | 20.4% | 136.6 / 31.8 | 49 | coding (820/1359 nt) | yedV | putative sensory kinase in two‑component regulatory system with YedW |
| Reads supporting (aligned to +/- strand): ref base T (17/22); new base . (4/6); total (21/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
CAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCGAGATCGT > NC_000913/2037241‑2037431 | cAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTg < 2:543521/99‑1 (MQ=255) cATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTc > 2:355574/1‑100 (MQ=255) ttGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAg > 1:335912/1‑100 (MQ=255) ttGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAg > 1:280905/1‑100 (MQ=255) tGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGTCAATTG‑‑TTTTTGATATTCAGCg < 2:757258/100‑1 (MQ=255) tGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTGTTTTTTTGATATTCAg < 1:389260/100‑1 (MQ=255) tGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGc < 2:656943/100‑1 (MQ=255) gTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCg > 1:11871/1‑100 (MQ=255) cTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCt > 1:410359/1‑100 (MQ=255) cTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCt > 2:1083868/1‑100 (MQ=255) cccTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑‑TTTTTGATATTCAGCGATACTTCTGGtt > 1:1155671/1‑100 (MQ=255) cccTGGCAAGAAACAGTATATTCTATGTTAAACGCAGAATAGTTTCCAGATCTTCAATGTTTCCGTCAACTG‑TTTCTTGATATTCAGCGATACttat > 2:648855/1‑95 (MQ=255) ccTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGtt < 1:814021/100‑1 (MQ=255) ccTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGt < 2:1027956/99‑1 (MQ=255) tGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTg < 2:125141/100‑1 (MQ=255) ggCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGa > 2:237372/1‑100 (MQ=255) gCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGAc < 2:363598/100‑1 (MQ=255) aGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTg > 1:635721/1‑99 (MQ=255) aGAAACAGTATGTTCTCTGTTAACCGCGAAATATCTCCGAGCTCGTCAATGTTTCCGGCAATTG‑TTTTTTTATATTCAGCGACACTTCTAGtcaggct > 2:1293258/1‑92 (MQ=255) aaCAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCg < 1:374997/100‑1 (MQ=255) aaCAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCg < 2:141428/100‑1 (MQ=255) aGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑‑TTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAAc < 2:491875/100‑1 (MQ=255) gTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑‑TTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAAcc < 1:408769/100‑1 (MQ=255) tATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAAcc < 1:984819/100‑1 (MQ=255) gTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGa > 2:1032671/1‑100 (MQ=255) tctcTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGAtt > 1:670975/1‑100 (MQ=255) ctctGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTTTTTTTTTTCTATACTTCTGGTTTGACTGAGCGTAACCTGATTc > 2:874694/1‑100 (MQ=255) ctctGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTc < 2:997627/100‑1 (MQ=255) ctctGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTc < 1:90680/100‑1 (MQ=255) gTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGAc < 2:1080673/100‑1 (MQ=255) aaCCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑‑TTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAg < 2:904846/100‑1 (MQ=255) aCCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAg < 2:145250/100‑1 (MQ=255) aCCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAg < 1:1092702/100‑1 (MQ=255) ccGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑‑TTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTa > 1:897081/1‑100 (MQ=255) atTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑‑TTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTaa > 2:954719/1‑100 (MQ=255) tttCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAAt < 1:982732/100‑1 (MQ=255) ttCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAAtt < 1:354882/100‑1 (MQ=255) tCCAGCTCTTCAATGTTTCCGGCAATTG‑‑TTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTgg < 1:33856/100‑1 (MQ=255) cAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGc < 1:286323/100‑1 (MQ=255) aGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCg < 2:635717/100‑1 (MQ=255) tGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTc > 1:1064665/1‑100 (MQ=255) ggCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCg > 1:233166/1‑100 (MQ=255) ggCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCg < 1:1032680/100‑1 (MQ=255) ggCAATTG‑‑TTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCga > 1:470102/1‑100 (MQ=255) gCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCga < 1:355577/100‑1 (MQ=255) gCAATTG‑‑TTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCgag < 1:971919/100‑1 (MQ=255) cAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCgag < 2:747440/100‑1 (MQ=255) cAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCgag > 2:74987/1‑100 (MQ=255) g‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCGAGATCGt > 2:334318/1‑100 (MQ=255) | CAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCTTCAATGTTTCCGGCAATTG‑TTTTTTGATATTCAGCGATACTTCTGGTTTGACTGAGCGTAACCTGATTCTGACCCAGTAATGCATTAATTGGCGTTCTAAGTTCATGAGCGAGATCGT > NC_000913/2037241‑2037431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |