| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4037481 | 20 (0.140) | 14 (0.110) | 5/170 | NT | 42.3% | intergenic (+146/‑38) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4037511 | NA (NA) | intergenic (+176/‑8) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
GGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT > NC_000913/4037382‑4037580 | ggTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAAC > 2:1909606‑M1/1‑100 (MQ=255) gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca > 1:856161/1‑100 (MQ=11) ttCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac < 2:2384887/100‑1 (MQ=31) cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga < 2:1816733/100‑1 (MQ=33) ntGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg > 2:807907/2‑100 (MQ=18) cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg > 2:3189278/1‑100 (MQ=33) cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat < 2:1031917/99‑1 (MQ=33) tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga < 2:243022/100‑1 (MQ=33) tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga < 1:2419974/100‑1 (MQ=33) gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat > 1:1288483/1‑100 (MQ=33) gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat > 1:3793140/1‑100 (MQ=33) gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat > 1:2115319/1‑100 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 2:2550322/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg > 1:57229/1‑100 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 1:457624/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg > 2:725513/1‑100 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 1:2160395/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg > 2:2720215/1‑100 (MQ=33) gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga > 1:3335437/1‑100 (MQ=33) gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga > 2:1392584/1‑100 (MQ=35) aaGTTTTGCTCTTTAAAACTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat < 1:2538715/94‑1 (MQ=17) gTTTTGCTCTTTAAAAATCTGGATCTAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 2:3056933/100‑1 (MQ=14) gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 2:710863/100‑1 (MQ=31) gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 2:3767940/100‑1 (MQ=31) gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 1:3596536/100‑1 (MQ=31) ttttGCTCGTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 1:3450509/99‑1 (MQ=11) aTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGACAGTTGTTCGTGAGTCTCTCAATTTTTCGCAACacgatgatgtttctttcgattcatcatcg < 1:787296‑M1/100‑30 (MQ=255) tGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgttactttcgattcatcatcgtgt < 1:20824‑M1/100‑33 (MQ=255) aTCAAGCTGAAAATTGAAACACTGAACCATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgc < 1:279760‑M1/100‑36 (MQ=255) tCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgcg < 2:2684507‑M1/100‑37 (MQ=255) tCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgc < 1:278195‑M1/99‑36 (MQ=255) tCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcg < 2:1220573‑M1/100‑37 (MQ=255) tCAAGCTGAAAATTGAAACACGGAACAACTAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcg < 1:1888649‑M1/100‑37 (MQ=255) aaGCTGAAAATTGAAACACTGAACAACGAAATTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaa < 1:2589810‑M1/100‑39 (MQ=255) aaGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttacgattcatcatcgtgttgcgaa < 2:779084‑M1/100‑39 (MQ=255) gCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgcgaaaa < 1:97539‑M1/100‑41 (MQ=255) tGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttcttgcgatccatcatcgtgttgcgaaaatt < 1:1539283‑M1/100‑43 (MQ=255) gAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCGAATTTTCACAACccgaagatgtttcttacgattcatcatcgtgttgcgaaaattn < 1:688987‑M1/100‑44 (MQ=255) gAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCACAACctgaatatgtttcttacgattcatcatcgtgttgcgaaaattt < 1:689156‑M1/100‑44 (MQ=255) aaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgag < 2:1949741‑M1/100‑47 (MQ=255) acctcgcAACccgaagaggtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttca < 1:1690077‑M1/95‑89 (MQ=255) cagcacccgaagatgtttctttcgattcctcatcgtgttgcgaaaatttgagagaatcacgaacaactttcgttgttcagtgtttcaattttcagctt < 1:3557364‑M1/94‑93 (MQ=255) cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc > 2:73505‑M1/1‑4 (MQ=255) cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatc > 1:2393160‑M1/1‑4 (MQ=255) cAACccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgat < 2:3386497‑M1/99‑96 (MQ=255) aaCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc < 2:2187407‑M1/100‑98 (MQ=255) aaCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc < 1:3559173‑M1/100‑98 (MQ=255) aaCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc < 1:3011890‑M1/100‑98 (MQ=255) aaCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc < 1:2758454‑M1/100‑98 (MQ=255) aaCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc < 1:2171204‑M1/100‑98 (MQ=255) aCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcca > 1:1969758‑M1/1‑2 (MQ=255) aCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcca < 1:207682‑M1/100‑99 (MQ=255) aCccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatcc < 1:1236413‑M1/99‑98 (MQ=255) cccgaagatgtttctttcgattcatcatcgtgttgcgagaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag > 1:3500383‑M1/1‑1 (MQ=255) cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag < 2:1749855‑M1/100‑100 (MQ=255) cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag > 1:3136771‑M1/1‑1 (MQ=255) cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag > 1:3045883‑M1/1‑1 (MQ=255) cccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccag > 1:2266773‑M1/1‑1 (MQ=255) | GGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT > NC_000913/4037382‑4037580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |