| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 29.1% | 435.5 / 214.8 | 254 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (97/83); new base C (73/1); total (170/84) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.47e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.61e-02 | |||||||||||
Only 100 of 257 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 1:2123468/1‑99 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:1841179/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:2803485/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 2:2463373/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:958081/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:592598/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:818949/100‑1 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa > 1:2555284/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATATAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAGCCGCCCTAC‑aa < 2:2198763/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a < 2:2555257/96‑1 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:3633464/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:1429135/1‑100 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt < 1:74454/100‑1 (MQ=255) ncacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc > 1:970644/2‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:1589918/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:1759541/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:181838/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:1963195/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 1:1623880/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 1:3485065/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATACGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:2677384/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:2390488/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCTGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:3973068/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑g < 2:3898464/100‑1 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga‑a > 1:3461367/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga‑a > 1:3845921/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga‑a < 1:2891323/100‑1 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑Att‑‑‑t > 1:3959379/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑Att‑‑‑t < 2:3959336/100‑1 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTc < 1:3302885/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑g < 1:1996007/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑g < 2:3113454/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑g < 2:698052/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGTCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑Gtn < 1:3103712/100‑2 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAg > 2:3096364/1‑100 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAgg > 1:276384/1‑100 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCt < 2:1034364/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGa > 2:3418752/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGa > 1:1495035/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATa < 1:3056097/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGTCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCgg < 2:1062575/100‑1 (MQ=255) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAgcgc > 2:3654749/1‑100 (MQ=255) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAAACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAgcgc < 2:2573710/100‑1 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCa < 2:3344152/100‑1 (MQ=255) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:1268481/8‑100 (MQ=18) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCAGGG‑ACT‑‑‑AT‑‑GTAGGCCTGATAAGCATAGCGCAt > 1:2056668/8‑100 (MQ=18) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCAGGG‑ACT‑‑‑AT‑‑GTAGGCCTGATAAGCATAGCGCAt > 2:1123788/8‑100 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATc < 2:3614070/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:1604004/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:3918225/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:3995290/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:551396/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:635868/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCA‑GG‑GAC‑‑‑TAT‑GTAGGCCTGATAAGCATAGCGCATCa > 1:3775130/6‑100 (MQ=18) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCA‑GG‑ATA‑‑‑CGT‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:3390611/6‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:608100/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAACATATTGCA‑‑A‑TTC‑‑‑TCCTGTAGGCCTGATAAGCGTAGCGCATCAg > 1:3225176/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:412827/5‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 2:420042/1‑100 (MQ=255) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑A‑TAT‑‑‑GAC‑GTAGGCCTGATAAGCGTAGCGCATCAGGcg > 1:3600999/3‑99 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑ATC‑‑‑CTC‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3571019/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCA‑GAGATC‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2802287/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GAT‑‑‑TAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:481317/3‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AAC‑‑‑CTT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3868350/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑GCC‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2678399/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1461546/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑ATC‑‑‑CAC‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3734885/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑ATC‑‑‑CTC‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2089800/2‑100 (MQ=21) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:3145687/1‑100 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑ATC‑‑‑CAC‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1347387/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑ATC‑‑‑CAC‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:3317680/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCA‑GG‑ATA‑‑‑CGT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1207656/1‑99 (MQ=17) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATGCGTGCAAATTCAATACATTGCATGG‑GCC‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:2938764/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TTA‑‑‑TTG‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 1:973996/9‑98 (MQ=25) ccggataaggcgTTCACGCCGCATCCGGCCTA‑‑TAAATCATGCAAATCCAAAATATTGCA‑GG‑AGT‑‑‑TAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 2:2003735/9‑100 (MQ=21) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:2313246/1‑100 (MQ=255) ccGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:2346837/1‑98 (MQ=17) cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑GCC‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatt > 1:3198393/8‑100 (MQ=18) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑ATC‑‑‑CTC‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatt > 1:241319/8‑100 (MQ=21) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt < 1:2146669/100‑1 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑A‑ATTCAACTT‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:4048753/7‑97 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:470887/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3601412/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GG‑CTC‑‑‑CAC‑GTAGGCCTGATAAGCGTAACGCATCAGGCa > 1:1913010/7‑96 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑ATC‑‑‑CTC‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 1:834315/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGATT‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1007299/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCAGGA‑ACG‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 1:2949985/7‑96 (MQ=25) ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:3460997/1‑100 (MQ=255) gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt > 1:3813783/1‑100 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:584437/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2463398/100‑1 (MQ=255) taaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGATT‑‑‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAATtttgc > 1:448749/4‑100 (MQ=17) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:2574081/100‑1 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:750926/100‑1 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt < 1:1429146/100‑1 (MQ=255) gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 2:1833528/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 1:1061649/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 1:2240378/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:796956/100‑1 (MQ=255) tATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt > 2:2608717/1‑100 (MQ=255) | TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |