| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3546222 = | NA (NA) | 12 (0.090) | 10/166 | NT | NA | noncoding (1/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3546254 = | NA (NA) | noncoding (33/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
ATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3546323‑3546222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggcCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > NC_000913/3546254‑3546352 ATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGG < 2:2574312/100‑1 TCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTATGCCCGAAATGACGCTTTAGCGTCGCATCGG > 2:3368937/1‑99 CGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC < 1:2102389/100‑1 CGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC < 2:83149/100‑1 CGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC < 2:752792/100‑1 CGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGG < 2:1162044/99‑1 CGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGACCCGAAATGACGCTTTAGCGTCGAATTGGGC > 1:3543572/1‑100 GGATTTGACAAAGCAATGCTGCGCCACCGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCC > 1:2376400/1‑100 CCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATGGGGCCTAAGTTGAACATGTGCCAGACGTTGGCGTAGTATTGCT > 2:1015738/1‑98 TCAACGTAGGCCAGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGT > 1:2566347/1‑100 AACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTT > 2:1832485/1‑100 ACGTAGGCCCGAAATGACGCTTTAGCGTCGCCTCGGGCCTACGTTGAACATGTACCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTC > 1:384871/1‑100 ACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTT > 1:3668155/1‑99 CGTAGGCCCGAAAGGACGCTTTAGCGTCGCATCGGGCCGACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCC > 2:2415113/1‑100 GTAGGCCCGAAATGACGCTTTAGCGTCACATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTCATTTATCAAATCCACGGTTCGTTTCC > 2:3640278/1‑99 GGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGC > 1:328209/1‑100 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG > 1:327869/1‑100 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAACATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGC > 1:1249810/1‑99 CCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG > 2:1717865/1‑99 GCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTGCCCCGCGATAATATGACCAACCTCccgta > 2:3337991/1‑94 TCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTT > 1:1844253/1‑100 CGGGCCTACGTTAAACATATACCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTAGGTTCGTTTCCCCGAGATAATATGAACAACCTCTCATAATTT > 2:971381/1‑99 GGGCCTACGTTGAAAATGTACCAGACGTTGGCGCAGCCTTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGACAATATAACCAACCTCTCCTAATT > 2:2740370/1‑97 GCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAAT < 2:2939885/100‑1 GCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAAT > 2:1135180/1‑100 CCTACGTTGAACATGTGCGAGAAGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCACCGCGATAATATGACCAAGCTCTCATAATTTAAATT > 2:3098495/1‑100 CCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > 2:2295332/1‑100 CCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > 1:3077847/1‑100 CCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > 1:2915775/1‑100 CCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCACCGCGATAATATGACCAACCTCTCATAATTTAAATT > 1:2542318/1‑100 CCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGATTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > 2:811838/1‑100 ATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3546323‑3546222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggcCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > NC_000913/3546254‑3546352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |