Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,792,2400T.22.7% 303.9 / 85.3 114intergenic (‑220/+27)ydiV/nlpCanti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (37/48);  new base . (9/16);  total (50/64)
Fisher's exact test for biased strand distribution p-value = 6.45e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.00e-01

Only 100 of 120 total aligned reads displayed.

GTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTG  >  NC_000913/1792141‑1792339
                                                                                                   |                                                                                                    
gTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGt                                                                                                      <  2:950228/100‑1 (MQ=255)
 tCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTa                                                                                                     <  2:852021/100‑1 (MQ=255)
   cTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑c                                                                                                  >  1:966034/1‑100 (MQ=255)
   cTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑c                                                                                                  <  2:2041235/100‑1 (MQ=255)
   cTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑c                                                                                                  <  1:2840543/100‑1 (MQ=255)
   cTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑c                                                                                                  >  1:2148850/1‑100 (MQ=255)
    tttttttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑ca                                                                                                 <  2:375314/100‑1 (MQ=255)
     ttttttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑cat                                                                                                >  2:1309379/1‑100 (MQ=255)
       ttttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCg                                                                                              >  1:2730480/1‑100 (MQ=255)
        tttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGc                                                                                             <  1:405514/100‑1 (MQ=255)
         ttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGcc                                                                                            <  2:2349269/100‑1 (MQ=255)
         ttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGcc                                                                                            <  2:125760/100‑1 (MQ=255)
           aGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGt                                                                                          <  1:1312491/100‑1 (MQ=39)
           aGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGt                                                                                          <  2:1511279/100‑1 (MQ=39)
            gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                         <  1:2670809/100‑1 (MQ=39)
            gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                         <  2:4129/100‑1 (MQ=39)
            gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                         <  2:193474/100‑1 (MQ=39)
            gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                         <  1:2916122/100‑1 (MQ=39)
            gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                         <  2:2710497/100‑1 (MQ=39)
            gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                         >  1:2182060/1‑100 (MQ=39)
            gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                         <  1:2732378/100‑1 (MQ=39)
            atctATCCTGATTATAAACGAATAATCCATTTACCGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                         <  2:1632389/97‑1 (MQ=38)
               tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAt                                                                                      <  1:2839725/100‑1 (MQ=255)
               tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTCCAt                                                                                      <  1:1109869/100‑1 (MQ=38)
               tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTCCAt                                                                                      <  1:2430326/100‑1 (MQ=38)
                aTCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAtt                                                                                     >  1:2407649/1‑100 (MQ=255)
                aTCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTcagat                                                                                     >  1:1632407/1‑96 (MQ=38)
                  ccTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAtttt                                                                                   >  2:880448/1‑100 (MQ=255)
                   cTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAttttt                                                                                  >  1:1664854/1‑100 (MQ=255)
                    tGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTc                                                                                 <  1:1073097/100‑1 (MQ=255)
                    tGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTc                                                                                 <  1:1086724/100‑1 (MQ=255)
                    tGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTCCAtttact                                                                                 <  1:480783/100‑4 (MQ=37)
                     gATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGTCGGCGATGTAT‑CATCGCCGTCCATTTTTc                                                                                 >  2:2186204/1‑99 (MQ=255)
                     gATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTCCAtttactc                                                                                <  2:2182037/100‑5 (MQ=37)
                       ttATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGAc                                                                              <  1:1504026/100‑1 (MQ=255)
                       ttATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGAc                                                                              >  1:2816445/1‑100 (MQ=255)
                       ttATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGAc                                                                              <  1:2394670/100‑1 (MQ=255)
                       gatctaaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGAc                                                                              <  2:2121012/95‑1 (MQ=255)
                           aaaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATAc                                                                          <  2:2245645/100‑1 (MQ=255)
                           aaaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGATA‑CATCGCCGTCCAtttactcctgaa                                                                           >  2:2380071/1‑90 (MQ=25)
                            aaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACagatc                                                                         >  1:2121035/1‑96 (MQ=255)
                            aaCGAATAATCCATTTACGGAATTTTCGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACt                                                                         <  1:1765120/100‑1 (MQ=255)
                              cGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAg                                                                       <  1:1963615/100‑1 (MQ=255)
                                aataatCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGAt                                                                     <  1:2507186/100‑1 (MQ=255)
                                      ccATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGtct                                                               >  2:762639/1‑100 (MQ=255)
                                      ccATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGtct                                                               <  1:2341310/100‑1 (MQ=255)
                                       cATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGtctc                                                              >  1:2112773/1‑100 (MQ=255)
                                       cATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGtct                                                               >  2:1804203/1‑99 (MQ=255)
                                        aTTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCg                                                             <  1:1907128/100‑1 (MQ=255)
                                          ttACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGcc                                                           >  2:1363517/1‑100 (MQ=255)
                                          ttACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGcc                                                           <  2:310374/100‑1 (MQ=255)
                                           tACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCt                                                          >  2:1526441/1‑100 (MQ=255)
                                           tACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCt                                                          >  1:1051048/1‑100 (MQ=255)
                                              ggAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGcc                                                       >  2:1020332/1‑100 (MQ=255)
                                              ggAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGcc                                                       <  1:534537/100‑1 (MQ=255)
                                               gAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCa                                                      >  2:758863/1‑100 (MQ=255)
                                                 aTTTTTGTCTGCAAAATACTACTGTATTCATGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGa                                                    <  2:2933544/100‑1 (MQ=255)
                                                 aTTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGATATTTTAGTTTCGTCTCGCCTGCCAGa                                                    >  2:2647128/1‑100 (MQ=255)
                                                 aTTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGa                                                    >  1:753170/1‑100 (MQ=255)
                                                         cTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTc                                            <  1:2765665/100‑1 (MQ=255)
                                                          tGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCt                                           >  1:22231/1‑100 (MQ=255)
                                                           gCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTg                                          >  2:2056897/1‑100 (MQ=255)
                                                            cAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGc                                         <  1:1189473/100‑1 (MQ=255)
                                                             aaaaTACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGcc                                        <  1:2909487/100‑1 (MQ=255)
                                                              aaaTACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCa                                       >  1:1947528/1‑100 (MQ=255)
                                                              aaaTACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCa                                       <  2:555284/100‑1 (MQ=255)
                                                                 tactacTGTATTAAGGCGTCAATGGACGGCGATGTAT‑CCTCGAAGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCTAATa                                    <  2:1799957/100‑1 (MQ=255)
                                                                   ctactGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGa                                  >  1:1448099/1‑100 (MQ=255)
                                                                    tactGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGAc                                 <  2:2112750/100‑1 (MQ=255)
                                                                    tactGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGAc                                 <  1:2915426/100‑1 (MQ=255)
                                                                     actGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGTCATACTATATTCGTCTCGCCTGCCAGAAATTTTTCTGCTAATAGACa                                >  2:62963/1‑100 (MQ=255)
                                                                     actGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACa                                <  2:1726707/100‑1 (MQ=255)
                                                                      ctctATTCAGGAGTAAATGCACGGGGATGTAT‑CATCCCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACAt                               <  1:1405977/97‑1 (MQ=255)
                                                                          aTTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATc                           >  1:339788/1‑100 (MQ=255)
                                                                          aTTAAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATAC‑AGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCa                          <  2:1001083/100‑1 (MQ=255)
                                                                             cAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAg                        <  2:2069044/100‑1 (MQ=255)
                                                                              aGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGt                       <  1:1859697/100‑1 (MQ=255)
                                                                              aGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGt                       <  1:290953/100‑1 (MQ=255)
                                                                              aGGAGTAAATGGAAGGCGATGTAT‑CATCGCCGTCCATTATTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGt                       >  2:1903747/1‑100 (MQ=255)
                                                                                  gTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAgg                   >  1:118012/1‑100 (MQ=255)
                                                                                     aaTGGACGGCGATGTAT‑CATCGCCGTCCATTTTTTTTTTTTTTTTATTCATCTAACCGGCCAGAAATTTTTTTTGTAATATACATTATCAAGTGTgg                   >  2:1112558/1‑97 (MQ=255)
                                                                                     aaTGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAAc                <  1:919267/100‑1 (MQ=255)
                                                                                       tGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGc              <  1:1903768/100‑1 (MQ=255)
                                                                                        ggACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCa             <  1:737420/100‑1 (MQ=255)
                                                                                        ggACGGCGATGATA‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCa             >  2:1327840/1‑100 (MQ=255)
                                                                                        ggACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCa             >  2:2874032/1‑100 (MQ=39)
                                                                                         gACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt            >  1:2358457/1‑100 (MQ=255)
                                                                                         gACGGCGATGATA‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt            >  1:296537/1‑100 (MQ=39)
                                                                                         gACGGCGATGATA‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTCTCTGCCAATAGACATTATCAAGTGAGGAACGCAt            >  1:3060929/1‑100 (MQ=38)
                                                                                         gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTTCCAATATACATTATCAAGTGAGGAACGCAt            >  2:311772/1‑100 (MQ=38)
                                                                                         gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt            >  1:966958/1‑100 (MQ=39)
                                                                                         gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt            >  1:2938956/1‑100 (MQ=39)
                                                                                         gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt            >  1:516747/1‑100 (MQ=39)
                                                                                          aCGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATc           <  1:1020343/100‑1 (MQ=255)
                                                                                          aCGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATTGACATTATCAAGTGAGGAACGCATc           >  2:3075852/1‑100 (MQ=38)
                                                                                          aCGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATc           >  2:2439317/1‑100 (MQ=39)
                                                                                           cGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCa          >  2:167842/1‑100 (MQ=255)
                                                                                                  gTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCtt   <  2:346714/100‑1 (MQ=255)
                                                                                                   tAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTg  >  2:1379532/1‑100 (MQ=255)
                                                                                                   tAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTg  >  1:1172205/1‑100 (MQ=255)
                                                                                                   |                                                                                                    
GTCCTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTG  >  NC_000913/1792141‑1792339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑