Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,792,2421.A22.7% 275.9 / 108.6 110intergenic (‑222/+25)ydiV/nlpCanti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein
Reads supporting (aligned to +/- strand):  ref base . (41/44);  new base A (9/16);  total (50/60)
Fisher's exact test for biased strand distribution p-value = 3.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.18e-01

Only 100 of 118 total aligned reads displayed.

CTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCT  >  NC_000913/1792144‑1792341
                                                                                                   |                                                                                                   
cTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑c                                                                                                    >  1:966034/1‑100 (MQ=255)
cTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑c                                                                                                    <  1:2840543/100‑1 (MQ=255)
cTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑c                                                                                                    >  1:2148850/1‑100 (MQ=255)
 tttttttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑ca                                                                                                   <  2:375314/100‑1 (MQ=255)
  ttttttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTat‑cat                                                                                                  >  2:1309379/1‑100 (MQ=255)
    ttttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCg                                                                                                >  1:2730480/1‑100 (MQ=255)
     tttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGc                                                                                               <  1:405514/100‑1 (MQ=255)
      ttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGcc                                                                                              <  2:2349269/100‑1 (MQ=255)
      ttAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGcc                                                                                              <  2:125760/100‑1 (MQ=255)
        aGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGt                                                                                            >  2:1322206/1‑100 (MQ=255)
        aGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGt                                                                                            <  1:1312491/100‑1 (MQ=39)
        aGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGt                                                                                            <  2:1511279/100‑1 (MQ=39)
         gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                           <  2:4129/100‑1 (MQ=39)
         gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                           <  2:2108364/100‑1 (MQ=39)
         gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                           <  2:2710497/100‑1 (MQ=39)
         gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                           <  1:2670809/100‑1 (MQ=39)
         gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                           <  1:2916122/100‑1 (MQ=39)
         gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                           <  2:193474/100‑1 (MQ=39)
         gATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTc                                                                                           <  1:2732378/100‑1 (MQ=39)
            tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAt                                                                                        <  1:2839725/100‑1 (MQ=255)
            tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTCCAt                                                                                        <  1:2430326/100‑1 (MQ=38)
            tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTCCAt                                                                                        <  2:344466/100‑1 (MQ=38)
            tATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTCCAt                                                                                        <  1:1109869/100‑1 (MQ=38)
             aTCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTcagat                                                                                       >  1:1632407/1‑96 (MQ=38)
               ccTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAtttt                                                                                     >  2:880448/1‑100 (MQ=255)
                cTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCAttttt                                                                                    >  1:1664854/1‑100 (MQ=255)
                 tGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTc                                                                                   <  1:1073097/100‑1 (MQ=255)
                 tGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTc                                                                                   <  1:1086724/100‑1 (MQ=255)
                 tGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTCCAtttact                                                                                   <  1:480783/100‑4 (MQ=37)
                  gATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGTCGGCGATGTAT‑CATCGCCGTCCATTTTTc                                                                                   >  2:2186204/1‑99 (MQ=255)
                  gATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATG‑ATACATCGCCGTCCAtttactc                                                                                  <  2:2182037/100‑5 (MQ=37)
                    ttATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGAc                                                                                <  1:2394670/100‑1 (MQ=255)
                    ttATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGAc                                                                                >  1:2816445/1‑100 (MQ=255)
                    gatctaaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGAc                                                                                <  2:2121012/95‑1 (MQ=255)
                        aaaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATAc                                                                            <  2:2245645/100‑1 (MQ=255)
                        aaaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGATA‑CATCGCCGTCCAtttactcctgaa                                                                             >  2:2380071/1‑90 (MQ=25)
                         aaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACagatc                                                                           >  1:2121035/1‑96 (MQ=255)
                         aaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACt                                                                           >  1:2768251/1‑100 (MQ=255)
                         aaCGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACt                                                                           <  1:1991565/100‑1 (MQ=255)
                         aaCGAATAATCCATTTACGGAATTTTCGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACt                                                                           <  1:1765120/100‑1 (MQ=255)
                           cGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAg                                                                         <  1:1963615/100‑1 (MQ=255)
                             aataatCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGAt                                                                       <  1:2507186/100‑1 (MQ=255)
                                   ccATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGtct                                                                 <  1:2341310/100‑1 (MQ=255)
                                   ccATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGtct                                                                 >  2:762639/1‑100 (MQ=255)
                                    cATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGtctc                                                                >  1:2112773/1‑100 (MQ=255)
                                    cATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGtct                                                                 >  2:1804203/1‑99 (MQ=255)
                                       ttACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGcc                                                             >  2:1363517/1‑100 (MQ=255)
                                       ttACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGcc                                                             <  2:310374/100‑1 (MQ=255)
                                        tACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCt                                                            >  2:1526441/1‑100 (MQ=255)
                                        tACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCt                                                            >  1:1051048/1‑100 (MQ=255)
                                           ggAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGcc                                                         <  1:534537/100‑1 (MQ=255)
                                           ggAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGcc                                                         >  2:1020332/1‑100 (MQ=255)
                                           gccttccacttCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGcc                                                         <  2:2275641/90‑1 (MQ=255)
                                            gAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCa                                                        >  2:758863/1‑100 (MQ=255)
                                              aTTTTTGTCTGCAAAATACTACTGTATTCATGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGa                                                      <  2:2933544/100‑1 (MQ=255)
                                              aTTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGATATTTTAGTTTCGTCTCGCCTGCCAGa                                                      >  2:2647128/1‑100 (MQ=255)
                                              aTTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGa                                                      >  1:753170/1‑100 (MQ=255)
                                                ttttGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGaaa                                                    <  1:1425783/100‑1 (MQ=255)
                                                   tGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAAttt                                                 >  1:2435542/1‑100 (MQ=255)
                                                       tGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCt                                             >  1:22231/1‑100 (MQ=255)
                                                        gCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTg                                            <  2:753165/100‑1 (MQ=255)
                                                        gCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTg                                            >  2:2056897/1‑100 (MQ=255)
                                                         cAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGc                                           >  1:1168827/1‑100 (MQ=255)
                                                         cAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGc                                           <  1:1189473/100‑1 (MQ=255)
                                                          aaaaTACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGcc                                          <  1:2909487/100‑1 (MQ=255)
                                                           aaaTACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCa                                         >  1:1947528/1‑100 (MQ=255)
                                                              tactacTGTATTAAGGCGTCAATGGACGGCGATGTAT‑CCTCGAAGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCTAATa                                      <  2:1799957/100‑1 (MQ=255)
                                                                ctactGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGa                                    >  1:1448099/1‑100 (MQ=255)
                                                                ctactGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGa                                    >  1:2911951/1‑100 (MQ=255)
                                                                 tactGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGAc                                   <  1:2915426/100‑1 (MQ=255)
                                                                 tactGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGAc                                   <  2:2112750/100‑1 (MQ=255)
                                                                  actGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGTCATACTATATTCGTCTCGCCTGCCAGAAATTTTTCTGCTAATAGACa                                  >  2:62963/1‑100 (MQ=255)
                                                                  actGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACa                                  <  2:1726707/100‑1 (MQ=255)
                                                                   ctctATTCAGGAGTAAATGCACGGGGATGTAT‑CATCCCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACAt                                 <  1:1405977/97‑1 (MQ=255)
                                                                       aTTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATc                             >  1:339788/1‑100 (MQ=255)
                                                                       aTTAAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATAC‑AGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCa                            <  2:1001083/100‑1 (MQ=255)
                                                                          cAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAg                          <  2:2069044/100‑1 (MQ=255)
                                                                           aGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGt                         <  1:1859697/100‑1 (MQ=255)
                                                                           aGGAGTAAATGGAAGGCGATGTAT‑CATCGCCGTCCATTATTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGt                         >  2:1903747/1‑100 (MQ=255)
                                                                            ggAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTg                        <  1:2289421/100‑1 (MQ=255)
                                                                               gTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAgg                     >  1:118012/1‑100 (MQ=255)
                                                                                  aaTGGACGGCGATGTAT‑CATCGCCGTCCATTTTTTTTTTTTTTTTATTCATCTAACCGGCCAGAAATTTTTTTTGTAATATACATTATCAAGTGTgg                     >  2:1112558/1‑97 (MQ=255)
                                                                                  aaTGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAAc                  <  1:919267/100‑1 (MQ=255)
                                                                                    tGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGc                <  1:1903768/100‑1 (MQ=255)
                                                                                     ggACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCa               <  1:737420/100‑1 (MQ=255)
                                                                                     ggACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCa               >  2:2874032/1‑100 (MQ=39)
                                                                                      gACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt              >  1:2358457/1‑100 (MQ=255)
                                                                                      gACGGCGATGATA‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt              >  1:296537/1‑100 (MQ=39)
                                                                                      gACGGCGATGATA‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTCTCTGCCAATAGACATTATCAAGTGAGGAACGCAt              >  1:3060929/1‑100 (MQ=38)
                                                                                      gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTTCCAATATACATTATCAAGTGAGGAACGCAt              >  2:311772/1‑100 (MQ=38)
                                                                                      gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt              >  1:966958/1‑100 (MQ=39)
                                                                                      gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt              >  1:2938956/1‑100 (MQ=39)
                                                                                      gACGGCGATG‑ATACATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCAt              >  1:516747/1‑100 (MQ=39)
                                                                                       aCGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATc             <  1:1020343/100‑1 (MQ=255)
                                                                                        cGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCa            >  2:167842/1‑100 (MQ=255)
                                                                                           cGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTc         <  2:1532966/100‑1 (MQ=255)
                                                                                               gTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCtt     <  2:346714/100‑1 (MQ=255)
                                                                                                tAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTg    >  2:280706/1‑100 (MQ=255)
                                                                                                tAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTg    >  2:1379532/1‑100 (MQ=255)
                                                                                                  t‑catcGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCt  <  1:762644/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CTTTTTTTAGATTATCCTGATTATAAACGAATAATCCATTTACGGAATTTTTGTCTGCAAAATACTACTGTATTCAGGAGTAAATGGACGGCGATGTAT‑CATCGCCGTCCATTTTTCGACATACTAGATTCGTCTCGCCTGCCAGAAATTTTTCTGCCAATAGACATTATCAAGTGAGGAACGCATCACTCCCTTGCT  >  NC_000913/1792144‑1792341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑