| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 43.3% | 197.3 / 285.6 | 217 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (49/74); new base C (93/1); total (142/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.85e-23 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.99e-01 | |||||||||||
Only 100 of 218 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 | ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt < 2:2071471/100‑1 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:1347484/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 1:610954/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:2970780/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:2181276/100‑1 (MQ=37) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 1:1464307/1‑100 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a < 2:2229045/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:2419358/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:715507/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt < 2:1717997/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:2858014/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:1966050/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACACCTTATCCGGCCTAC‑AAAATCGTg > 2:1391728/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:904642/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:43043/100‑1 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt < 1:2939124/100‑1 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt < 2:229758/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:2240940/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:1837613/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:2132377/1‑100 (MQ=255) caGCGCTACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:1286753/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:2857986/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa < 1:979603/100‑1 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATTCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 2:1404725/1‑99 (MQ=255) ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCa > 1:1375973/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑TAAATCGTGCAAATTCAATACATTGCA‑GA‑Att‑‑‑tt < 2:2038711/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑Att‑‑‑tt > 2:2933668/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTc < 2:2212386/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑g < 2:2478712/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑g < 2:2369302/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTa < 1:1924279/100‑1 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAg < 2:1922372/100‑1 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAgg < 2:426588/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGcc < 2:390663/100‑1 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCt < 1:2044402/100‑1 (MQ=255) ttgACAAAGTGCGCTTTGTTGATGCCGGATGCGGCGTTAGCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCt < 2:2772865/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGa < 2:2683300/100‑1 (MQ=255) aaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGa > 1:928465/2‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 1:1640142/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 2:3061109/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGAtgcgctcc > 1:460638/1‑93 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:1788351/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1369024/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:1879093/100‑1 (MQ=255) ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑ATC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCa > 2:1769391/9‑100 (MQ=21) ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCA‑GAGATC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCa > 1:676191/9‑100 (MQ=17) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:1605329/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCA‑GA‑AAT‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:2376834/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:1200845/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AGC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:1046052/7‑100 (MQ=17) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAAATTGTGTAAATTCAATATATTGAT‑CG‑ATC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:1183400/7‑100 (MQ=18) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2590805/5‑100 (MQ=18) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGCA‑AT‑TCT‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:103512/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2620726/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TTA‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:3001535/4‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑ATC‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2260622/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 2:2636986/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:78956/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑ATC‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1760422/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCA‑GG‑ATA‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2741117/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GAT‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2109148/3‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GTT‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:474452/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GTT‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:622228/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:777102/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:696460/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1835910/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑ATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3055622/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑AT‑CTC‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2820538/2‑100 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2808389/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1452139/1‑99 (MQ=17) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCA‑AT‑CTT‑‑‑CTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaa > 1:96037/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑ATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:84063/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑ATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1001982/1‑99 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑ATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:41349/9‑98 (MQ=21) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt < 2:974133/100‑1 (MQ=255) cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GTT‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:1825193/8‑100 (MQ=17) cggataaggcgTTCACGCCTTATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCAGGA‑ACG‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaact > 2:1047157/8‑97 (MQ=25) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑AT‑CTC‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 1:891575/8‑97 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑GCC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:581699/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GTT‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2612360/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GTT‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2107367/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑A‑ATTCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:1127671/7‑97 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AGC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:530611/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATACATTCAATGTATTGCA‑GT‑TTA‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCACGCaat > 1:3074054/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGATT‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:3046099/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GAT‑‑‑TAT‑‑GTAGACCTGATAAGCGTAGCGCATCAGGCAattt > 2:1859892/7‑100 (MQ=17) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑ATC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 1:1487741/6‑100 (MQ=21) gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt > 1:588275/1‑100 (MQ=255) taaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑GCC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattttac > 2:3040789/4‑98 (MQ=18) taaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑ACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 1:1687843/4‑100 (MQ=18) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:636043/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:896604/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt < 1:2484349/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCCATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2933698/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:1613808/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑TTTGTTTTTTTAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:2337558/1‑100 (MQ=21) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 1:2176383/100‑1 (MQ=255) gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 1:2297876/1‑100 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:683446/1‑100 (MQ=255) tATCCGGCCTAC‑ACAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGACCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt > 2:1910829/1‑100 (MQ=255) | GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |