| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1592638 | NA (NA) | 8 (0.100) | 6/156 | NT | NA | noncoding (8/25 nt) | REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1592647 | NA (NA) | noncoding (17/25 nt) | REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1592529‑1592638‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagccgcatgTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGCAGCGTT < NC_000913/1592647‑1592549 ccTATCCGCTCTACGGGATAAACGCAGCGATATCCGCGATCGCGGAGAAAAAGGAGGATTTAAATAAGGCGTTGATGCTCCGTTTGAAGTCGGCAATATT > 1:408558/3‑100CTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCTCCGTTTGAAGTCGGCAATATT > 1:1089660/1‑100CTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATT > 1:2586000/1‑100 TTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTA < 1:276522/100‑1 TATCCGCTCAACGGGATAAACGCTGCGATATCCGCGATAGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAA < 1:211935/100‑1 ATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAG > 2:2006708/1‑100 ATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAG > 1:388917/1‑100 ATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAG < 1:494310/100‑1 ATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAG < 2:1044344/100‑1 TCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGC < 2:237639/100‑1 TCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGC < 1:592146/100‑1 CCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCC < 2:393140/100‑1 CCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCC > 2:1202441/1‑100 CCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCC > 2:1134819/1‑100 CTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATG > 2:885821/1‑100 CTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATG < 2:170361/100‑1 CTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCAT < 1:1646056/99‑1 GCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGG < 2:126089/100‑1 CGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAGTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGC < 2:2211061/100‑1 CGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGC < 2:864609/100‑1 GATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGCT < 2:829604/100‑1 tctcaGCGATCGAGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGCTTA < 1:772855/95‑1 CGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGCTTAATAT < 1:301918/100‑1 ATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCA < 1:2185938/100‑1 GGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGAT > 1:2116624/1‑100 TAAGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATA < 2:503086/100‑1 AAGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATAT > 2:1396844/1‑100 AAGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAAAGGGGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATAT > 1:1785958/1‑100 AGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATC > 2:756652/1‑100 AGCCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATACGCGATCGCGGATATC > 1:49457/1‑100 CCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATAaaaa < 2:317607/100‑5 CCGCATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGC > 1:561810/1‑100 CATGTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGCAGC > 2:2443688/1‑100 GTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGCAGCGTT < 2:1347142/100‑1 CTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1592529‑1592638‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagccgcatgTCGAGATGGCATGCGGCTTAATATTGCCGACTTCAAACGGCGCATCAACGCCTTATTTAAATCCTCCTTTTTATCCGCGATCGCGGATATCGCAGCGTT < NC_000913/1592647‑1592549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |