New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16113476 (0.830)18 (0.220) 12/162 NT 19.0% coding (353/705 nt) sfsA sugar fermentation stimulation protein A
?NC_000913 = 161144 84 (1.010)coding (343/705 nt) sfsA sugar fermentation stimulation protein A

GACCGCATCGGGAAAATATCCCTGTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/161028‑161134
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacggcGCAGAACGCAGCCGTATTGACTTTATGTTGCAGGCGGATTCGCGTCCAGACTGCTATATTGAAGTGAAATCGGTTACGTTAGCGGAGAACGAACAGG  <  NC_000913/161144‑161048
                                                                                                                                                                                                            
GACCGCATCGGGAAAATATCCCTGTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCA                                                                                                          >  2:1510388/1‑100
    GCATCGGGAAAATATCCCTGTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATAC                                                                                                      >  2:132586/1‑100
     CATCGGGAAAATATCCCTGTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACG                                                                                                     >  2:2586233/1‑100
     CATCGGGAAAATATCCCTGTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACG                                                                                                     <  1:2142216/100‑1
      ATCGGGAAAATATCCCTGTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGG                                                                                                    <  1:1995226/100‑1
      ATCGGGAAAATATCCCTGTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGAGAATCCGCCTGCAACATAAAGTCAATcccg                                                                                                    >  2:127031/1‑96
      ATCGGGAAAATATCCCTGTTCGTGCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGATTCCGTTTGAAACATAAAGTCAATACG                                                                                                     <  1:2097076/99‑1
         GGGAAAATATCCCTGTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGC                                                                                                 >  1:1153014/1‑100
                       GTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTA                                                                                   <  2:1153018/100‑1
                        TTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTAT                                                                                  <  2:590696/100‑1
                        TTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTAT                                                                                  <  1:642010/100‑1
                         TCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATT                                                                                 <  1:1657469/100‑1
                         TCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATT                                                                                 <  1:433732/100‑1
                         TCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACACAGCCGTATT                                                                                 <  1:1196349/100‑1
                          CGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTG                                                                                <  1:1931853/100‑1
                          CGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTG                                                                                <  1:1897695/100‑1
                          CGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTG                                                                                <  1:1664650/100‑1
                          CGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTG                                                                                <  2:2038862/100‑1
                           GTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTGA                                                                               <  1:122396/100‑1
                             TCTCCGCTAACGTAACCGATTTCACTTCAGTATAGCAGTCTGGACGCGAATCCGCCTGCAACATAATGTCAATACGGCGCAGAACGCAGCCGTATTGACT                                                                             <  1:1556710/100‑1
                               TCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTGACTTT                                                                           <  1:945535/100‑1
                               TCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTGACTT                                                                            <  1:665714/99‑1
                                   CTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTGACTTTATGT                                                                       <  1:751194/100‑1
                                     AACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTGACTTTATGTTG                                                                     <  1:680113/100‑1
                                            CCGATTTCACTTCCATATAGCAGTCTGGACGCGAATCCGCCTGCAACCTAACGTCAATACGGCGCAGACCGCAGCCGTATTGACTTTATGTTGCAGGC                                                                <  2:763620/98‑1
                                                  TCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGCGCAGAACGCAGCCGTATTGACTTTATGTTGCAGGCGGATTC                                                          <  1:829445/98‑1
                                                                                                     TACGGCGCAGAACGCAGCCGTATTGACTTTATGTTGCAGGCGGATTCGCGTCCAGACTGCTATATTGAAGTGAAATCGGTTACGTTAGCGGAGAACGAAC     >  1:547212/1‑100
                                                                                                     TACGGCGCAGAACGCAGCCGTATTGACTTTATGTTGCAGGCGGATTCGCGTCCAGACTGCTATATTGAAGTGAAATCGGTTACGTTAGCGGAGAACGAAC     <  1:821361/100‑1
                                                                                                        nGCGCAGAACGCAGCCGTATTGACTTTATGTTGCAGGCGGATTCGCGTCCAGACTGCTATATTGAAGTGAAATCGGTTACGTTAGCGGAGAACGAACAGG  >  1:1628387/2‑100
                                                                                                                                                                                                            
GACCGCATCGGGAAAATATCCCTGTTCGTTCTCCGCTAACGTAACCGATTTCACTTCAATATAGCAGTCTGGACGCGAATCCGCCTGCAACATAAAGTCAATACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/161028‑161134
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacggcGCAGAACGCAGCCGTATTGACTTTATGTTGCAGGCGGATTCGCGTCCAGACTGCTATATTGAAGTGAAATCGGTTACGTTAGCGGAGAACGAACAGG  <  NC_000913/161144‑161048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.