| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4635837 = | 115 (1.110) | 9 (0.090) | 8/170 | NT | 8.1% | coding (317/474 nt) | creA | putative periplasmic protein |
| ? | NC_000913 | 4635885 = | 94 (0.950) | coding (365/474 nt) | creA | putative periplasmic protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TCTACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4635939‑4635837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCC > NC_000913/4635885‑4635981 TCTACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTT > 1:1774326/1‑100TCTACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTT > 2:1531709/1‑100 CTACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTT > 2:2310733/1‑100 CTACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTT > 2:2310714/1‑100 CTACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTT > 2:2310713/1‑100 TACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTT > 2:2607727/1‑100 TACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTT < 2:2230993/100‑1 TACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTT < 1:1117474/100‑1 ACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTTT < 2:1328437/100‑1 TGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGA > 2:365003/1‑100 GGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTATTTATGATGCCAAACGCAACGCGCTCGATTATCTGGCTTACTCCGAC > 1:937512/1‑100 GCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACA > 1:735459/1‑100 CATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAA > 1:749348/1‑100 ATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAA > 1:760503/1‑100 ATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAA > 1:705366/1‑100 TAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGGTTTTATGATGCCAAACGCAACACGCTCGCTTATCTGGCTTAATCCGACAAAGTT > 1:2421363/1‑99 CACGACCTGTAACGACTTAAAGACCAGGGACGTGCGCTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGT > 2:1106582/1‑100 CTGTAACGACTTAAAGACCAGGGACGTGCGTTTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCG < 2:705368/100‑1 TTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGC < 1:2574211/100‑1 TTTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGC < 1:2472823/100‑1 tgTATGATGCCATACGCAACGCGCTCGCTTATATGGCTTACTCCGACAAAGTTGTAGAAGATTCGACAAAAAACGCGATTAGCGCGGTTCCTGTCATGC < 1:1999665/97‑1 TTTATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCC > 1:2676985/1‑100 TCTACAACTTTGTCGGAGTAAGCCAGATAAGCGAGCGCGTTGCGTTTGGCATCATAAAAGCGCACGACCTGTAACGACTTAAAGACCAGGGACGTGCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4635939‑4635837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttATGATGCCAAACGCAACGCGCTCGCTTATCTGGCTTACTCCGACAAAGTTGTAGAAGGTTCGCCGAAAAACGCGATTAGCGCGGTTCCTGTCATGCC > NC_000913/4635885‑4635981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |