| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 41.6% | 273.5 / inf | 281 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (92/72); new base C (113/4); total (205/76) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.41e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.96e-02 | |||||||||||
Only 100 of 283 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2683104/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTGTGCCGGATGCGGCGTTAACGCCTTAt > 1:1380772/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:2130855/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1568755/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:2060411/100‑2 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt > 2:1633559/1‑100 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa > 2:1334344/1‑100 (MQ=255) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc < 2:37798/100‑1 (MQ=255) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc < 2:34747/100‑1 (MQ=255) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaa < 1:2187116/100‑2 (MQ=25) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 1:3175436/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa < 1:1932104/100‑1 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 1:834200/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 2:2965499/1‑100 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt < 1:1218372/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:128274/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:2906089/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:1050419/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:821864/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGGTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:1303478/1‑100 (MQ=255) agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaa > 1:999389/1‑100 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 1:3233446/1‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:2840855/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 1:2396575/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑g < 2:315224/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑g > 2:738546/1‑100 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑At < 2:1533940/100‑1 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑At < 2:2802759/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑g > 2:1735310/1‑100 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑Gt < 1:662644/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑Gt > 2:3192613/1‑100 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑Gt > 1:879260/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGc < 2:613185/100‑1 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGccn < 2:1170729/100‑2 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATa > 1:2090669/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATa < 2:1065198/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGc < 2:3245923/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg > 2:4128/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg > 1:589677/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 2:2390336/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa > 2:1012508/1‑100 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa > 1:381876/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 1:2996701/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc > 1:2632174/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:2258854/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:2770920/100‑1 (MQ=255) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑C‑‑A‑CC‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:510925/8‑100 (MQ=18) tGTTTATGCCGGATGGGGCGTTAGCGCCTTATCCGGTCTAC‑AAGATCGTGCAAATTCGATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:254476/99‑1 (MQ=18) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑‑‑GA‑ATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:1121180/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:1181973/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTG‑C‑‑A‑GAGAT‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:2345972/7‑100 (MQ=17) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:1509871/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:2765394/100‑1 (MQ=255) ngtaggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTG‑C‑‑A‑GA‑AA‑T‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:696428/6‑100 (MQ=18) cgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCGTAC‑GAAATCGTGCTAATTCAATATATTG‑T‑‑G‑GG‑CT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:2242991/6‑100 (MQ=21) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTG‑C‑‑ATGG‑GC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:3022136/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTG‑C‑‑A‑GA‑GA‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:780444/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTG‑CGGA‑GA‑AA‑A‑‑‑T‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:794244/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑‑AAACCGCGCAAATTCAATATATTG‑C‑‑G‑GA‑GA‑A‑‑‑AAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1477032/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TG‑AG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2283585/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑C‑‑A‑GG‑AG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1747510/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑‑AAACCGCGCAAATTCAATATATTG‑CGGA‑GA‑AA‑A‑‑‑T‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:200442/4‑100 (MQ=18) taggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 2:2439937/4‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑C‑‑A‑CC‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1661117/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑C‑‑AGGG‑AC‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:2708847/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAGTTCGTGCAAATTCAATAAATTG‑C‑‑A‑‑A‑TA‑T‑‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcg > 2:2281968/3‑99 (MQ=18) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑GTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa < 1:1144524/100‑1 (MQ=255) ggacggataaggcgTTCACGCCGCATCCGTCCTAC‑AAGTTCATGCAATTTTAATAAGTTGCC‑‑A‑GA‑TA‑T‑‑‑CCT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2423221/11‑100 (MQ=25) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑C‑‑A‑GA‑GT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2650298/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GG‑AC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3195863/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TG‑AG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2169263/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GT‑TT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:1777595/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTG‑C‑‑‑‑‑A‑AT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:625132/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑C‑‑A‑GG‑GA‑C‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 1:2664858/2‑100 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2120521/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTG‑C‑‑‑‑‑A‑AT‑T‑‑‑CTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 1:1821118/1‑98 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTG‑C‑‑‑‑‑A‑AT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:3137849/1‑100 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑C‑‑A‑GG‑AG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1724615/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑C‑‑A‑GG‑GA‑C‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCag > 1:3089461/1‑99 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GG‑AC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1253716/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAATCCTTGCGAATTCAATATATTG‑T‑‑ATGG‑AA‑A‑‑‑TTC‑‑‑‑AGGCCTGATAAGCGTAGCGCATCAGGCtttt > 2:479706/9‑100 (MQ=25) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:2720228/1‑100 (MQ=255) ccGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GG‑AC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:1371519/1‑98 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GA‑AA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2919671/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑C‑‑A‑GA‑GT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1488497/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TG‑AG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2831307/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑C‑‑A‑CC‑AT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 2:184925/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTG‑C‑‑A‑GAGAT‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:1425824/7‑100 (MQ=17) ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 1:497200/1‑100 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:1159230/100‑1 (MQ=255) taaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑C‑‑AGGG‑AC‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagctttac > 2:2160413/4‑93 (MQ=21) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:53518/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:367114/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:1448762/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 1:1576267/100‑1 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 1:725969/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 2:1697269/1‑100 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 1:2512069/1‑100 (MQ=255) cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 1:2461578/1‑100 (MQ=255) tATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt > 2:3223255/1‑100 (MQ=255) | TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GA‑AT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |