Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,594,256 (C)8→7 100% pseudogene (3732/3861 nt) yneO ← pseudogene, AidA homolog

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,594,2490C.76.5% 202.6 / 82.7 81pseudogene (3739/3861 nt)yneOpseudogene, AidA homolog
Reads supporting (aligned to +/- strand):  ref base C (11/7);  new base . (32/30);  total (43/38)
Fisher's exact test for biased strand distribution p-value = 5.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.81e-01

CCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCG  >  NC_000913/1594152‑1594343
                                                                                                 |                                                                                              
ccTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTACCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcc                                                                                               >  1:1361593/1‑99 (MQ=255)
 cTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccc                                                                                             >  1:1654194/1‑100 (MQ=255)
  tGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGTATCTTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTccccc                                                                                            <  2:1865759/100‑1 (MQ=255)
  tGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTccccc                                                                                            <  1:472213/100‑1 (MQ=255)
   gCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccccc                                                                                           >  1:860609/1‑100 (MQ=255)
   gCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccccc                                                                                           >  2:847376/1‑100 (MQ=255)
     aGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTccccccca                                                                                         >  2:880145/1‑99 (MQ=255)
      gtggtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccccccac                                                                                        <  1:1308080/100‑3 (MQ=255)
       tggtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCAc                                                                                       <  1:1083354/100‑1 (MQ=255)
       tggtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCAc                                                                                       <  1:1083543/100‑1 (MQ=255)
         gtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGat                                                                                    <  1:385595/100‑1 (MQ=255)
          tgACATTTCCCGACATCACACCGCTGGTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAACAAACCCCCCCAccac                                                                                    <  2:1820340/100‑4 (MQ=255)
            aCATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATc                                                                                 <  2:860600/100‑1 (MQ=255)
             cATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATcc                                                                                <  2:1892422/100‑1 (MQ=255)
              aTTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcg                                                                               >  2:1627291/1‑100 (MQ=255)
              aTTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcg                                                                               <  2:750098/100‑1 (MQ=255)
              aTTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcg                                                                               >  2:1627392/1‑100 (MQ=255)
              aTTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcg                                                                               <  2:2102728/100‑1 (MQ=255)
                ttCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtc                                                                             <  2:414256/100‑1 (MQ=255)
                ttCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtc                                                                             <  1:116239/100‑1 (MQ=255)
                  cccGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtcgt                                                                           >  2:904097/1‑100 (MQ=255)
                  cccGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtc                                                                             >  2:737404/1‑98 (MQ=255)
                        aTCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTg                                                                     >  2:993949/1‑100 (MQ=255)
                            cacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATa                                                                  >  1:250026/1‑100 (MQ=255)
                            cacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATa                                                                  <  1:1004029/100‑1 (MQ=255)
                            cacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGAt                                                                   >  1:546674/1‑98 (MQ=255)
                            cacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATAc                                                                 >  2:319278/1‑100 (MQ=255)
                            cacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATAc                                                                 >  2:1666582/1‑100 (MQ=255)
                             acCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAA‑TTCCCCCCCCACGATATCCGTCGTACCCTGATAc                                                                 <  2:1479004/99‑1 (MQ=255)
                              ccGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATAcgc                                                               >  1:1019013/1‑100 (MQ=255)
                                gCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATAcgccg                                                             >  2:763496/1‑100 (MQ=255)
                                  tGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCcgcg                                                           <  2:1749853/100‑1 (MQ=255)
                                   gTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGTAACCGAAAGCAATTTCCCCCCCC‑CGATATCCGTCGTACCCTGATACGCCGCgg                                                          <  1:2197797/100‑1 (MQ=255)
                                   gTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACACCGCgg                                                          >  1:850959/1‑100 (MQ=255)
                                     tATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGaa                                                        >  2:6761/1‑100 (MQ=255)
                                      aTGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGaa                                                        >  1:1733937/1‑99 (MQ=255)
                                      aTGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAAt                                                       <  1:933661/100‑1 (MQ=255)
                                         gATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgt                                                    <  1:465696/100‑1 (MQ=255)
                                          atatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgtt                                                   <  2:341715/100‑1 (MQ=255)
                                           tatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttg                                                  >  2:1095716/1‑100 (MQ=255)
                                           tatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttg                                                  <  1:919965/100‑1 (MQ=255)
                                            atTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgt                                                 >  1:2232462/1‑100 (MQ=255)
                                             ttAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCTCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgt                                                 <  2:1074416/100‑1 (MQ=255)
                                               aaTGTGTTGACTTGCCGTATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTaa                                              >  1:1973318/1‑100 (MQ=255)
                                               aaTGTGTTGACTTGCCATATTAATGGCAGAGTTGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGGCGTACCCCGATACGCCGCGGAATCGTTGTTaa                                              <  1:928799/100‑1 (MQ=255)
                                                   tgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAagag                                           >  1:377360/1‑100 (MQ=255)
                                                    gtTGACATGCCATAATAATGGCAGAGTCCTAGCCGAAAGCAATTT‑CCCCCCCACGATATGCGTCGTACCCTGATCCGCCGCGGAATCGTTGTTAAGAGTc                                         <  2:924833/100‑1 (MQ=255)
                                                      tGACTTGCCATATTAATGGCAGAGTCGAAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCATTGTTAAGAATCAg                                       >  2:2425301/1‑100 (MQ=255)
                                                       gACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAAAGTCa                                        >  1:2067421/1‑99 (MQ=255)
                                                       gACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAgg                                      <  2:331978/100‑1 (MQ=255)
                                                       gACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGATGTTAAGAGTCAg                                       >  1:1294/1‑99 (MQ=255)
                                                       gACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAACCGTTGTTAAGAGCCa                                        >  1:893350/1‑98 (MQ=255)
                                                         cTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGAt                                    >  1:269104/1‑100 (MQ=255)
                                                         cTTGCCACATTCATGGCAGAATCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGAt                                    >  2:1389485/1‑100 (MQ=255)
                                                            gCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑TCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATccc                                 <  1:2115545/100‑1 (MQ=255)
                                                            gCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATccc                                 <  2:2443931/100‑1 (MQ=255)
                                                                tatTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTCACCTGATACGCCGCGGAATAGTTGTTAATAATCAGGATCCGGGTa                             >  1:2284640/1‑100 (MQ=255)
                                                                tatTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGCGTCAGGATCCCGGTa                             >  2:667981/1‑100 (MQ=255)
                                                                 atTCATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAc                            <  2:2593081/100‑1 (MQ=255)
                                                                 atTAATGGCAGAGTCTGATCCGAAAGCAATTT‑CCCCCCTTCGTTATCCGTGGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAc                            <  1:221302/100‑1 (MQ=255)
                                                                 atTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAAGATCCCGGTa                             >  1:353524/1‑100 (MQ=255)
                                                                 atTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAc                            <  2:1936282/100‑1 (MQ=255)
                                                                         cAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAAAGTCACGATCCCGGTACCCAGttt                     >  1:2299626/1‑100 (MQ=255)
                                                                         cAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGtttt                    >  1:795573/1‑100 (MQ=255)
                                                                          agagTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTg                   <  1:1490438/100‑1 (MQ=255)
                                                                           gagTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTTTTAAGAGTCAGGATCCCGATACCCAGTTTTg                   >  1:1832318/1‑100 (MQ=255)
                                                                           gagTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGt                  <  2:1819823/100‑1 (MQ=255)
                                                                             gTCGGACCCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTca                <  2:2371274/100‑1 (MQ=255)
                                                                             gTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTca                <  2:1733921/100‑1 (MQ=255)
                                                                              tCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTcac               <  2:546670/100‑1 (MQ=255)
                                                                              tCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTcac               <  1:2432245/100‑1 (MQ=255)
                                                                               cGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTcaca              <  1:1666598/100‑1 (MQ=255)
                                                                                ggAACCGAAAGCAATTTCCCCCCCCACAATATCCGTCGTACCCTGATACGCCGCGGCATCGTTGTTAAGAGACAGGATACCGGTACCCAGTTTTGTcaca              >  2:538145/1‑100 (MQ=255)
                                                                                ggAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGAATCCCGGTACCCAGTTTTGTcaca              >  1:411120/1‑99 (MQ=255)
                                                                                   aCCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTCCCCTGATACCCCGCGGAATCGTTGCTAAGAGTCACGATCCCGACACCCAGCTTTGTCACATCac          >  1:821837/1‑100 (MQ=255)
                                                                                    tctaaaGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc         <  2:2342809/97‑1 (MQ=255)
                                                                                    ccGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc         <  2:562704/100‑1 (MQ=255)
                                                                                    ccGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAATTTTGTCACATCac          >  1:435779/1‑99 (MQ=255)
                                                                                      gAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccg        <  2:1525055/100‑1 (MQ=255)
                                                                                      gAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgc       <  1:1731543/100‑1 (MQ=255)
                                                                                      gAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGATGATAAGAGTCAGGATCCTGGTACCCAACTTTGTCACATCaccgc       >  1:52171/1‑100 (MQ=255)
                                                                                      gAAAGCAATTT‑CCCCCCAACGATATCCGTCGTACCCTGATACGCAGAAGAATCGTTGTTAAGAGTCAGGATCCCGATAACCAGTTTTGTCACATCaccg        >  2:1706342/1‑99 (MQ=255)
                                                                                       aaaGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccaga      >  1:2342839/1‑97 (MQ=255)
                                                                                        aaGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgcta     >  1:1472527/1‑100 (MQ=255)
                                                                                         aGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgcta     >  2:746688/1‑100 (MQ=255)
                                                                                          gCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctac    >  2:1186180/1‑100 (MQ=255)
                                                                                           cAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctacc   >  1:1765560/1‑100 (MQ=255)
                                                                                            aaTTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctaccg  >  2:1628646/1‑100 (MQ=255)
                                                                                            aaTTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctacc   >  1:1302761/1‑98 (MQ=255)
                                                                                                 |                                                                                              
CCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCG  >  NC_000913/1594152‑1594343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑