BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	2,470,410	(T)_7→6	100%	coding (1280/1332 nt)	gtrS →	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,470,404	0	T	.	100.0%	668.3 / NA	141	coding (1274/1332 nt)	gtrS	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (72/69); total (72/69)

Only 100 of 151 total aligned reads displayed.

TTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTA  >  NC_000913/2470308‑2470499

tttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGtttt                                                                                              <  1:2143444/100‑1 (MQ=255)

 ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttt                                                                                             <  2:2560537/100‑1 (MQ=255)

 ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttt                                                                                             <  1:2050442/100‑1 (MQ=255)

 tccgatctCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttt                                                                                             <  1:368520/93‑1 (MQ=255)

     gtgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaat                                                                                         >  1:2357082/1‑97 (MQ=255)

     gtgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaat                                                                                         >  1:2257814/1‑97 (MQ=255)

      tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGttttttaatt                                                                                        <  2:2646059/100‑5 (MQ=255)

       gtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAAttt                                                                                      <  1:422570/100‑1 (MQ=255)

       gtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAAttt                                                                                      >  1:327470/1‑100 (MQ=255)

        tCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTta                                                                                     >  1:1491125/1‑100 (MQ=255)

         cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTTTTTTTTCTTTTGCTTATACATAACAGTCG‑TTTTTTAATTtat                                                                                    >  2:425253/1‑100 (MQ=255)

         cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtat                                                                                    >  1:2583313/1‑100 (MQ=255)

         cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtat                                                                                    <  1:1535643/100‑1 (MQ=255)

         cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTAATTTGGAATGTATTTTTCGTTCAACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtat                                                                                    >  2:888127/1‑100 (MQ=255)

          aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtata                                                                                   >  1:1964756/1‑100 (MQ=255)

          aTTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTtata                                                                                   <  1:1698590/100‑1 (MQ=255)

            ttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATaaa                                                                                 <  2:434978/100‑1 (MQ=255)

                cGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAaataa                                                                             >  1:175767/1‑100 (MQ=255)

                cGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAaataa                                                                             >  2:402767/1‑100 (MQ=255)

                  gggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTTTTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAAtt                                                                           <  1:103476/100‑1 (MQ=255)

                  gggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAAtt                                                                           <  2:2244525/100‑1 (MQ=255)

                  gggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAAtt                                                                           >  2:48846/1‑100 (MQ=255)

                   ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAaataat                                                                            >  2:326899/1‑98 (MQ=255)

                   ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTc                                                                          <  2:78440/100‑1 (MQ=255)

                     aaGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTc                                                                          <  1:1272509/98‑1 (MQ=255)

                     aaGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCaa                                                                        <  2:2454094/100‑1 (MQ=255)

                       ggATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAg                                                                      <  2:25392/100‑1 (MQ=255)

                       ggATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAg                                                                      <  2:2651766/100‑1 (MQ=255)

                       ggATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAg                                                                      <  2:1088637/100‑1 (MQ=255)

                       ggATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAg                                                                      <  2:1676159/100‑1 (MQ=255)

                       ggATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAg                                                                      <  2:208919/100‑1 (MQ=255)

                          tataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGaaa                                                                   >  1:914769/1‑100 (MQ=255)

                          tataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGaaa                                                                   >  1:2489099/1‑100 (MQ=255)

                          tataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGAACTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATACAATAATTAAAAgta                                                                    >  2:1312897/1‑97 (MQ=255)

                           ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAAt                                                                  <  1:1732265/100‑1 (MQ=255)

                           ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAAt                                                                  >  1:2203644/1‑100 (MQ=255)

                            taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAAt                                                                  >  1:1241895/1‑99 (MQ=255)

                            taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATc                                                                 >  1:1421781/1‑100 (MQ=255)

                             agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCa                                                                >  1:320237/1‑100 (MQ=255)

                             agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCa                                                                >  2:538970/1‑100 (MQ=255)

                             agagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCa                                                                <  2:560246/100‑1 (MQ=255)

                              gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCaa                                                               >  1:1764040/1‑100 (MQ=255)

                              gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCaa                                                               <  1:1844423/100‑1 (MQ=255)

                               agaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAg                                                              <  1:885486/100‑1 (MQ=255)

                               agaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAg                                                              <  2:648610/100‑1 (MQ=255)

                                gaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                             >  1:786462/1‑100 (MQ=255)

                                 aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAc                                                            <  1:70936/100‑1 (MQ=255)

                                  tttAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACa                                                           >  1:489037/1‑100 (MQ=255)

                                   ttAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACa                                                           <  2:2078802/99‑1 (MQ=255)

                                     aagcaagcATTTATTTGAAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAACTAATTCAAAGAAATCAAGACAATa                                                        >  2:1291928/1‑100 (MQ=255)

                                      agcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAg                                                       >  2:1814898/1‑100 (MQ=255)

                                      agcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAg                                                       <  2:1118910/100‑1 (MQ=255)

                                          agcaTTTATTTGGAATGTATTTTTCGTTCTACCTTTTCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGa                                                    <  1:18996/99‑1 (MQ=255)

                                            caTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGt                                                 >  2:2482888/1‑100 (MQ=255)

                                             atttatttGGAATGTATTTTTCGTTCTACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTa                                                <  2:2376541/100‑1 (MQ=255)

                                               ttatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTaaa                                              >  2:2165138/1‑100 (MQ=255)

                                                tatttGGAATTTATTTTTCGTTCGACCTTTTCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAg                                             <  1:482082/100‑1 (MQ=255)

                                                tatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAg                                             <  2:1427500/100‑1 (MQ=255)

                                                tatttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAg                                             >  1:1425276/1‑100 (MQ=255)

                                                 atttGTAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                            <  1:2482918/100‑1 (MQ=255)

                                                 atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                            <  2:327468/100‑1 (MQ=255)

                                                 atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                            <  2:1241883/100‑1 (MQ=255)

                                                 atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                            <  1:2347389/100‑1 (MQ=255)

                                                 atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                            <  2:254547/100‑1 (MQ=255)

                                                  tttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCa                                           <  2:1439594/100‑1 (MQ=255)

                                                  tttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGAAAATAGCAATGTAAAGCa                                           >  1:296256/1‑100 (MQ=255)

                                                   ttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAc                                          <  2:833929/100‑1 (MQ=255)

                                                    tgtaaTGTATTTTTCGTTCGACGTTTGCTTATACATAACATTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                            <  2:2370454/94‑1 (MQ=255)

                                                    tGGAATGTATTTTTTTTTTTTCTTTTGCTTATAAATAACAGACG‑TTTTTTAATTTATAAACTAATTCAAAGAAATCAAGCCAATACCAAGGTAAAGCa                                           >  2:1670333/1‑98 (MQ=255)

                                                      gAATGTATTTTTCGTTCGACCTTTGCTTATACATAAAAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCATTaa                                       >  2:411675/1‑100 (MQ=255)

                                                          gTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGttt                                   <  2:2328026/100‑1 (MQ=255)

                                                          gTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGttt                                   <  1:1370481/100‑1 (MQ=255)

                                                             tttttCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCAATAAGTTTaaa                                >  1:1185716/1‑100 (MQ=255)

                                                              ttttCGTTCGATCTTTTCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGttt                                   <  2:2137871/96‑1 (MQ=255)

                                                              ttttCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                               <  2:1480938/100‑1 (MQ=255)

                                                              ttttCGTTCGACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                               <  2:1352633/100‑1 (MQ=255)

                                                                 tcgttcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgc                            <  1:104467/100‑1 (MQ=255)

                                                                  cgttcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcg                           >  1:776837/1‑100 (MQ=255)

                                                                  cgttcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcg                           >  1:571674/1‑100 (MQ=255)

                                                                   gttcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgc                          <  2:1000867/100‑1 (MQ=255)

                                                                   gttcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgc                          >  2:1907893/1‑100 (MQ=255)

                                                                   gttcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgc                          >  1:2174525/1‑100 (MQ=255)

                                                                     tcgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgcgc                        >  2:2011152/1‑100 (MQ=255)

                                                                      cgATCTTTGCTTATACATAACAGTAG‑TTTTTTAATGTATACAATAATTGAGCGAAATCAAGTCAATAGCTTTGTAAAGCACTATGTTTAAAGTgcgc                          <  2:1341205/97‑1 (MQ=255)

                                                                      cgACCTTTGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGcc                       <  1:468976/100‑1 (MQ=255)

                                                                         ccTTTGCTTATACGTAACAGTCG‑TTTTTTAAATTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAAt                    >  1:1782282/1‑100 (MQ=255)

                                                                           tttGCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCa                  <  1:2588251/100‑1 (MQ=255)

                                                                              gCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg               <  2:1998761/100‑1 (MQ=255)

                                                                              gCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg               <  1:425720/100‑1 (MQ=255)

                                                                              gCTTATACATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAAGAAATAGCTATGGAAAGCTCTAAGTTTAAATTGCGCGTCAATCATg                >  2:1580170/1‑99 (MQ=255)

                                                                                   taCATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgcgcgc          <  1:1792934/100‑1 (MQ=255)

                                                                                   taCATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgcgcgc          >  2:804479/1‑100 (MQ=255)

                                                                                   taCATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgcgcg           >  2:2572345/1‑99 (MQ=255)

                                                                                     cATAACAGTCG‑TTTTTTAATTTATAATATAATTTAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGca         <  1:810705/99‑1 (MQ=255)

                                                                                     cATAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcac        >  1:2594741/1‑100 (MQ=255)

                                                                                     cATAACAGTCG‑TTTTTTAATTTATAAAATAACTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcac        >  2:1269461/1‑100 (MQ=255)

                                                                                      aTAACAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGcaca       <  2:914760/100‑1 (MQ=255)

                                                                                        aaCAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAg     <  1:2276277/100‑1 (MQ=255)

                                                                                          cAGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCt   >  1:2508434/1‑100 (MQ=255)

                                                                                           aGTCG‑TTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACCAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAg     <  1:1875208/97‑1 (MQ=255)

TTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTA  >  NC_000913/2470308‑2470499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`