New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 361219	NA (NA)	8 (0.090)	7/162	NT	NA	noncoding (12/29 nt)	REP29 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP29 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 361228	NA (NA)					noncoding (21/29 nt)	REP29 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP29 (repetitive extragenic palindromic) element; contains 1 REP sequences

ACGTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/361113‑361219 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgataCGCTGC‑GCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCCTCTTTGAC  <  NC_000913/361228‑361132                                                                                                                                                                                                               ACGTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGG                                                                                                           <  2:276451/100‑1  CGTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGTGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGC                                                                                                          >  2:86557/1‑100  CGTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGC                                                                                                          <  2:2460289/100‑1  CGTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGC                                                                                                          <  2:1580421/100‑1   GTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGTTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCC                                                                                                         <  1:160792/100‑1   GTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCC                                                                                                         >  1:1538142/1‑100     TTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTG                                                                                                       <  1:897397/100‑1        CCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATA                                                                                                    <  1:1293534/100‑1        CCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATA                                                                                                    <  2:2192170/100‑1        CCGCAGCTGTGGGTCAAAAAAGCATGATGCGACGCTTGTTCCTGCGCATTGTACATGCCGGATGCGGCTAATGTAGATCGCTGAAATTGTAGGACT                                                                                                        >  2:929828/1‑96                   GGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCCTGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATACGCTGC‑GCTTA                                                                                        <  2:1692439/100‑1                         AGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATGCGCTGC‑GCTTATCAGGC                                                                                  <  1:2486288/100‑1                         AGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATACGCTGC‑GCTTATCAGGC                                                                                  <  1:1452593/100‑1                          GAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATACGCTGC‑GCTTATCAGGCC                                                                                 <  2:1979286/100‑1                          GAGGCATGATGCGACGCTTGTTCCTGCGCTTTCTTCCTGCCGGATTCGGCTAATGTAGATCGCTGAACTTGTAGGCTTGATACGCTGC‑GCTTATCAGGC                                                                                  <  2:1182644/99‑1                           AGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATACGCTGC‑GCTTATCAGGCCT                                                                                <  1:2226342/100‑1                                                                                         TGAACTTGTAGGCCTGATAAGC‑GCAGCGTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGC                  >  1:1722215/1‑100                                                                                              TTGTAGGCCTGATAAGC‑GCAGCGTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCAT             >  1:762535/1‑100                                                                                                 TAGGCCTGATAAGCGCA‑GCGTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCC          >  2:67212/1‑100                                                                                                    GCCTGATACGCTGC‑GCTTATCAGGCATACAAGTTCGGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCCTCT       >  2:1984179/1‑100                                                                                                     CCTGATACGCTGC‑GCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCCTCTT      <  1:862462/100‑1                                                                                                      CTGATACGCTGC‑GCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCCTCTTT     <  2:1760668/100‑1                                                                                                      CTGATACGCTGC‑GCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCCTCTTT     <  1:811263/100‑1                                                                                                       TGATACGCTGC‑GCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCCTCTTTG    <  1:1216358/100‑1                                                                                                        GATACGCTGC‑GCTTATTAGTCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCCTCTTTGA   <  1:1166485/100‑1                                                                                                         ATACGCTGC‑GCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCCTCTTTGAC  <  2:17720/100‑1                                                                                                                                                                                                               ACGTTTTCCGCAGCTGTGGGTCAAAGAGGCATGATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/361113‑361219 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgataCGCTGC‑GCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCCTCTTTGAC  <  NC_000913/361228‑361132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.