New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1198454 =	152 (1.340)	6 (0.070) +CATTTCATCATTTCATCATTTCATCATT	3/142	13.8	5.1%	intergenic (‑217/‑241)	ymfE/lit	e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage
	?	NC_000913	= 1198505	158 (1.390)					intergenic (‑268/‑190)	ymfE/lit	e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1198496‑1198454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTC  <  NC_000913/1198505‑1198464                                            ||||||||||||||||||||||||||||                                           CATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATC               >  2:2807990/1‑100 CATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATC               >  2:51299/1‑100         CATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATa       >  2:1497756/1‑99              tcttcTCATCTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTC  <  1:1497744/95‑1              TTTCATCATTTCATCATTTCATCTTTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTC  <  1:2807964/100‑1              TTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCGTCATTTCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTC  <  1:51299/100‑1                                            ||||||||||||||||||||||||||||                                           CATCATTTCATCATTTCATCATTTCATCATTTCATCATTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1198496‑1198454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCATCATTTCATCATTTCATCATTTCATCATTTCATCATTTC  <  NC_000913/1198505‑1198464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.