Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	420,149	Δ1 bp	coding (559/1320 nt)	brnQ →	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	420,146	0	T	.	100.0%	367.1 / NA	81	coding (556/1320 nt)	brnQ	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (31/50);  total (31/50)

CCGCTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGTTTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGCGCGTTCTCGTGGC  >  NC_000913/420047‑420241                                                                                                    |                                                                                                ccgcTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGt                                                                                                 >  2:1738095/1‑100 (MQ=255)  cgcTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGTGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtt                                                                                                <  1:408526/100‑1 (MQ=255)  cgcTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtt                                                                                                <  1:522776/100‑1 (MQ=255)  cgcTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtt                                                                                                >  1:1637411/1‑100 (MQ=255)   gcTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGttt                                                                                               >  2:2363707/1‑100 (MQ=255)   gcTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGttt                                                                                               >  1:1779166/1‑100 (MQ=255)    cTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtttc                                                                                              <  1:1738110/100‑2 (MQ=255)    cTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtttc                                                                                              <  2:1227353/100‑2 (MQ=255)     tGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtttct                                                                                             >  1:2735925/1‑98 (MQ=255)     tGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtttct                                                                                             <  2:1738406/100‑3 (MQ=255)     tGAAAATTATCGCGCTGGTCATCCTGTCTGTTACCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtttct                                                                                             <  1:2724206/100‑3 (MQ=255)      gAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtttcta                                                                                            <  1:215131/100‑4 (MQ=255)      gAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTGCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGtttcta                                                                                            >  2:213768/1‑97 (MQ=255)        aaaTTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAAc                                                                                         >  2:1437117/1‑100 (MQ=255)        aaaTTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAAc                                                                                         >  1:2214597/1‑100 (MQ=255)          aTTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACgg                                                                                       >  2:1816732/1‑100 (MQ=255)           ttATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGACGGCGGGTTCTATCAGCACCGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGc                                                                                      >  2:1658168/1‑100 (MQ=255)             aTCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCtt                                                                                    >  2:1748186/1‑100 (MQ=255)               cgcgCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCtcag                                                                                  <  2:2997279/100‑4 (MQ=255)               cgcgCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCg                                                                                  <  2:2253356/100‑1 (MQ=255)                gcgcTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGt                                                                                 <  2:967730/100‑1 (MQ=255)                  gcTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTa                                                                               >  2:368739/1‑100 (MQ=255)                     ggTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACg                                                                            >  2:2063520/1‑100 (MQ=255)                     ggTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACg                                                                            <  1:1782254/100‑1 (MQ=255)                       tCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGc                                                                          <  1:701415/100‑1 (MQ=255)                       tCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGc                                                                          <  2:2981320/100‑1 (MQ=255)                          tCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTAt                                                                       <  1:1130138/100‑1 (MQ=255)                           ccTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATc                                                                      <  2:13029/100‑1 (MQ=255)                           ccTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATc                                                                      <  1:2782536/100‑1 (MQ=255)                            tcttctgtTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCt                                                                     <  1:1973991/97‑1 (MQ=255)                               tctgtTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCtaga                                                                  >  2:1973973/1‑97 (MQ=255)                                ctgtTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGAcc                                                                 <  1:2408228/100‑1 (MQ=255)                                 tgtTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCa                                                                >  2:1006438/1‑100 (MQ=255)                                     gCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGa                                                            <  2:2817354/100‑1 (MQ=255)                                     gCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGa                                                            >  1:457262/1‑100 (MQ=255)                                     gCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGa                                                            <  2:1514230/100‑1 (MQ=255)                                     gCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGa                                                            <  2:89169/100‑1 (MQ=255)                                       cGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATa                                                          <  2:1779151/100‑1 (MQ=255)                                         cTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACg                                                        <  1:2543412/100‑1 (MQ=255)                                           gatctCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCt                                                      <  1:2439798/96‑1 (MQ=255)                                           aTTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCt                                                      <  2:152079/100‑1 (MQ=255)                                            ttGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTg                                                     <  1:1521063/100‑1 (MQ=255)                                             tGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTgg                                                    <  1:1048844/100‑1 (MQ=255)                                               tCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGgc                                                  <  1:93767/100‑1 (MQ=255)                                               tCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGgc                                                  <  1:2309762/100‑1 (MQ=255)                                                cTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCtagat                                                  >  2:2439776/1‑95 (MQ=255)                                                cTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGgcg                                                 >  1:2871616/1‑100 (MQ=255)                                                cTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCGTCGTTAACGGCTATCTGACCATGGATACGCTGGgcg                                                 >  1:2125545/1‑100 (MQ=255)                                                  ggCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCa                                               >  1:383806/1‑100 (MQ=255)                                                  ggCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCa                                               <  2:2225406/100‑1 (MQ=255)                                                    ccGGAGGGTTCTATCAGCACGGAGACTGAGGCTTATCAAAGCGCTGCG‑TTGGTAAGAGCGGCGTTAACGGCTATGTGACCAGGGATACGCTGGGCGCaa                                              >  2:2527556/1‑99 (MQ=255)                                                     cggcggGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATg                                            <  2:457258/100‑1 (MQ=255)                                                     cggcggGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TGTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATg                                            <  1:970155/100‑1 (MQ=255)                                                      ggcggGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATgg                                           >  2:1035974/1‑100 (MQ=255)                                                        cggGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGgtg                                         <  1:2368349/100‑1 (MQ=255)                                                        cggGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCACAATGgtg                                         >  1:432583/1‑100 (MQ=255)                                                          ggTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGtt                                       >  2:2941601/1‑100 (MQ=255)                                                           gTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGttt                                      >  2:889412/1‑100 (MQ=255)                                                           gTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGttt                                      >  2:2031057/1‑100 (MQ=255)                                                             tCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTgg                                    <  1:2697508/100‑1 (MQ=255)                                                              cTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGt                                   >  1:490289/1‑100 (MQ=255)                                                                  cAGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCg                               <  2:565777/100‑1 (MQ=255)                                                                   aGCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGt                              <  1:1344776/100‑1 (MQ=255)                                                                    gCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGtt                             <  1:2669615/100‑1 (MQ=255)                                                                    gCACGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGAATACGCTGGGCGCAATGGTGTTTGGTATCGtt                             <  2:2508299/100‑1 (MQ=255)                                                                      aCGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGtt                             <  2:2174970/98‑1 (MQ=255)                                                                       cGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTAtt                          <  2:2630851/100‑1 (MQ=255)                                                                       cGGCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTAtt                          >  1:374005/1‑100 (MQ=255)                                                                        ggCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTg                         <  2:344169/100‑1 (MQ=255)                                                                        ggCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTg                         <  1:2363728/100‑1 (MQ=255)                                                                        ggCGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTg                         <  2:425055/100‑1 (MQ=255)                                                                          cGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGtt                       <  2:1853567/100‑1 (MQ=255)                                                                          cGACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGtt                       <  1:1437129/100‑1 (MQ=255)                                                                           gACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTa                      <  1:1894185/100‑1 (MQ=255)                                                                           gACTGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTa                      <  1:1894147/100‑1 (MQ=255)                                                                              tGAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAAcg                   >  1:2703422/1‑100 (MQ=255)                                                                               gAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAAcgc                  >  2:1273967/1‑100 (MQ=255)                                                                               gAGGCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAAcgc                  >  1:1469392/1‑100 (MQ=255)                                                                                  gCTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACgcggc               >  1:2294601/1‑100 (MQ=255)                                                                                   cTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACgcggcg              <  2:1382498/100‑1 (MQ=255)                                                                                   cTTATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACgcgccg              <  1:2555077/100‑1 (MQ=255)                                                                                     tATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGcgcg            >  1:826572/1‑100 (MQ=255)                                                                                     tATCAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGcgcg            >  1:1183557/1‑100 (MQ=255)                                                                                        cAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGCGCGTtc         >  2:2475975/1‑100 (MQ=255)                                                                                        cAAAACGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGCCGCGtta         <  1:290244/100‑2 (MQ=255)                                                                                         aaaaCGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGCGCGTtct        >  2:2253572/1‑100 (MQ=255)                                                                                           aaCGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGCGCGTTCTCg      <  2:133873/100‑1 (MQ=255)                                                                                           aaCGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGCCGCGttaaca      <  1:2908980/100‑5 (MQ=255)                                                                                            aCGCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGCCGCGttaacaa     <  1:368744/100‑6 (MQ=255)                                                                                              gCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGCGCGTTCTCGTgg   >  1:1103629/1‑100 (MQ=255)                                                                                              gCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGCCGCGttaacaata   <  1:2647907/100‑8 (MQ=255)                                                                                              gCTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAACGGTGTTTGGTATCGTTATTGTTAACGCGGCGCGTTCTCGTgg   <  2:253397/100‑1 (MQ=255)                                                                                               cTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGCGCGTTCTCGTGGc  <  2:490284/100‑1 (MQ=255)                                                                                               cTGCG‑TTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGCGCGTTCTCGTGGc  <  1:1132839/100‑1 (MQ=255)                                                                                                    |                                                                                                CCGCTGAAAATTATCGCGCTGGTCATCCTGTCTGTTGCCGCTATTGTCTGGCCGGCGGGTTCTATCAGCACGGCGACTGAGGCTTATCAAAACGCTGCGTTTTCTAACGGCTTCGTTAACGGCTATCTGACCATGGATACGCTGGGCGCAATGGTGTTTGGTATCGTTATTGTTAACGCGGCGCGTTCTCGTGGC  >  NC_000913/420047‑420241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑