New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4628815 =148 (1.230)5 (0.050) 4/164 NT 3.4% noncoding (121/150 nt) RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 4628845 = 144 (1.300)intergenic (+298/+10) nadR/ettA trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/energy‑dependent translational throttle A
Rejected: Frequency below cutoff threshold.

Only 100 of 187 total aligned reads displayed.

TGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAA  >  NC_000913/4628746‑4628943
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cgctgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatGCCGGATAAGGCGTTCGCGCCGCATCCGGCa                                                                                                    >  1:1318529‑M1/70‑100 (MQ=255)
  aTGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAtt                                                                                                  >  1:2911060/1‑100 (MQ=255)
   tGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAttt                                                                                                 <  2:2863925/100‑1 (MQ=255)
    gCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAtttt                                                                                                >  2:1212682/1‑100 (MQ=255)
     cGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                                                                                               >  1:1025033/1‑100 (MQ=255)
     cGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                                                                                               <  1:1189329/100‑1 (MQ=255)
      gACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTAc                                                                                              >  1:1417660/1‑100 (MQ=255)
       cgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACg                                                                                             >  2:244090‑M1/63‑100 (MQ=255)
       aCGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACg                                                                                             <  2:1398231/100‑1 (MQ=255)
       aCGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACg                                                                                             <  2:3030262/100‑1 (MQ=255)
        cGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGc                                                                                            >  2:623907/1‑100 (MQ=255)
         gCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGc                                                                                            <  1:483379/99‑1 (MQ=255)
            tACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTa                                                                                        >  2:1665882/1‑100 (MQ=255)
             aCCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc                                                                                       >  1:1914571/1‑100 (MQ=255)
             aCCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc                                                                                       <  2:144233/100‑1 (MQ=255)
             aCCGCGTCTTATCAGGCCTACAGTTTTACAACGTAATGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGCTCGCTCCGCATCCGGCTTTTTACGCATTAc                                                                                       >  1:1463195/1‑100 (MQ=38)
              ncgcgTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACt                                                                                      >  2:614398/2‑100 (MQ=255)
              ccGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATGAGGCGATCGCGCCGGATCCGGCATTTTACGCATTACt                                                                                      >  2:2185860/1‑100 (MQ=255)
               cgcgTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACtt                                                                                     <  2:3097991/100‑1 (MQ=255)
                 cgTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCg                                                                                   <  2:2746247/100‑1 (MQ=255)
                 cgTCTTATCAGGCCTACAGTTTTACAACGTAGTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCTCGCCGCATCCGGCATTTTACGCATTACTTCg                                                                                   <  2:559902/100‑1 (MQ=255)
                  gTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                  >  1:1435758/1‑100 (MQ=255)
                  gTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                  >  1:513472/1‑100 (MQ=255)
                  gTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                  <  1:3066108/100‑1 (MQ=255)
                   ttttATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                  <  2:1516466/97‑1 (MQ=255)
                   tCTTATCAGGCCTACAGTTTTACAACGTGGTGAAATTGATGGTTTTGTAGGCCGGATAAGGCGTGCGCGCCGCATCCGGCATTTTACTCATTACttag                                                                                   >  1:1072729/1‑96 (MQ=37)
                   tCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                  >  1:3174692/1‑99 (MQ=255)
                   tCTTATAATGCCTACAGTTTTACAACTTATTGAAATTGCTTGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                  <  1:3121170/99‑1 (MQ=37)
                     ttATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCa                                                                                 >  1:1154211/1‑98 (MQ=255)
                     ttATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAAt                                                                               >  2:723598/1‑100 (MQ=255)
                     ttATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAAt                                                                               >  1:214534/1‑100 (MQ=255)
                      tATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATa                                                                              >  1:2490218/1‑100 (MQ=255)
                      tATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATa                                                                              >  1:247208/1‑100 (MQ=255)
                      tATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATa                                                                              >  2:1474287/1‑100 (MQ=255)
                           ggCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCtt                                                                         <  2:281454/100‑1 (MQ=255)
                           ggCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCtt                                                                         >  1:1646200/1‑100 (MQ=255)
                            gCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTg                                                                        <  2:1342425/100‑1 (MQ=255)
                            gCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTg                                                                        >  1:422126/1‑100 (MQ=255)
                             ccTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTg                                                                        <  2:2911035/99‑1 (MQ=255)
                              cTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTa                                                                      >  1:2068721/1‑100 (MQ=255)
                                aCAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACt                                                                    >  1:1658643/1‑100 (MQ=255)
                                 cAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt                                                                   <  1:761035/100‑1 (MQ=255)
                                 cAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt                                                                   <  2:1924629/100‑1 (MQ=255)
                                  aGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTg                                                                  >  1:1830541/1‑100 (MQ=255)
                                    ttttACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGAt                                                                <  2:3132715/100‑1 (MQ=255)
                                      ttACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATAc                                                              >  1:2799793/1‑100 (MQ=255)
                                       tACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACg                                                             <  2:2307862/100‑1 (MQ=255)
                                        aCAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGc                                                            >  1:3039404/1‑100 (MQ=255)
                                         cAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGc                                                            >  2:2920561/1‑99 (MQ=255)
                                           aCGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTc                                                         <  1:1173050/100‑1 (MQ=255)
                                              tATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGc                                                      <  1:2266498/100‑1 (MQ=255)
                                              tATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGc                                                      >  1:2586851/1‑100 (MQ=255)
                                                  gAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCa                                                  >  2:446774/1‑100 (MQ=255)
                                                  gAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCa                                                  >  2:666251/1‑100 (MQ=255)
                                                  gAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCa                                                  <  1:18781/100‑1 (MQ=255)
                                                   aaaTTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAg                                                 >  2:1044487/1‑100 (MQ=255)
                                                     aTTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAgcg                                               <  2:2248092/100‑1 (MQ=255)
                                                      ttGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAgcgc                                              >  1:622489/1‑100 (MQ=255)
                                                       tGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGcgcg                                             >  1:854590/1‑100 (MQ=255)
                                                       tGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGcgcg                                             <  2:2611974/100‑1 (MQ=255)
                                                            gTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCATCGCGTCTg                                         <  2:2706389/99‑1 (MQ=255)
                                                             cgtaaaatgccggatgcggcgcgaacgccttatccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTgcg                                       >  1:3060245‑M2/39‑100 (MQ=255)
                                                             cgtaaaatgccggatgcggcgcgaacgccttatccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTgcg                                       >  2:244090‑M2/39‑100 (MQ=255)
                                                                tGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGccc                                    >  1:2411536/1‑100 (MQ=255)
                                                                tGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGccc                                    <  1:1780526/100‑1 (MQ=255)
                                                                  tAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAg                                  >  2:62182/1‑100 (MQ=255)
                                                                   aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATCCGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgc                                 >  2:1996868/1‑100 (MQ=255)
                                                                   aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgc                                 >  1:2861776/1‑100 (MQ=255)
                                                                   aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgc                                 <  2:546311/100‑1 (MQ=255)
                                                                    tgccggatgcggcgcgaacgccttatccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcg                                >  1:1318529‑M2/32‑100 (MQ=255)
                                                                       cggatgcggcgcgaacgccttatccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtgc                             >  1:39609‑M2/29‑100 (MQ=255)
                                                                        GGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCagcgtgcn                            >  2:1650076‑M1/1‑99 (MQ=255)
                                                                        GGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtgcg                            <  1:3080896‑M1/100‑1 (MQ=255)
                                                                        GGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtgcg                            >  1:559313‑M1/1‑100 (MQ=255)
                                                                             aGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCCGCGCGTCTGCGCCCAGCGTGCGTTTCt                       >  1:2173661/1‑100 (MQ=255)
                                                                              ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                      >  1:2302015/1‑100 (MQ=255)
                                                                              ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                      >  2:1475718/1‑100 (MQ=255)
                                                                              ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                      <  2:2935993/100‑1 (MQ=255)
                                                                              ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                      >  1:577925/1‑100 (MQ=255)
                                                                               gtgTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTg                     >  2:1234862/3‑100 (MQ=255)
                                                                               gCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTg                     <  1:1475693/100‑1 (MQ=255)
                                                                                cGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGt                    <  2:2080086/100‑1 (MQ=255)
                                                                                cGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGt                    >  1:972983/1‑100 (MQ=255)
                                                                                  ttCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTAc                  <  2:550504/100‑1 (MQ=255)
                                                                                  ttCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTAc                  <  1:808838/100‑1 (MQ=255)
                                                                                  ttCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTAc                  <  1:2526639/100‑1 (MQ=255)
                                                                                   tCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTAct                 >  1:884227/1‑100 (MQ=255)
                                                                                   tCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTAct                 >  1:1280851/1‑100 (MQ=255)
                                                                                     gcgcCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTActct               >  1:3188125/1‑100 (MQ=255)
                                                                                      cgccgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCtt              <  2:2014369/100‑1 (MQ=255)
                                                                                       gccgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTc             <  2:513470/100‑1 (MQ=255)
                                                                                         cgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGt           <  1:2331085/100‑1 (MQ=255)
                                                                                         cgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGt           <  1:1107945/100‑1 (MQ=255)
                                                                                             tccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATATGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTc       >  1:1718231‑M2/7‑100 (MQ=255)
                                                                                             tccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTc       >  2:1733713‑M2/7‑100 (MQ=255)
                                                                                             tccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTc       <  1:1667948‑M2/94‑1 (MQ=255)
                                                                                              ccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCg      >  1:1521668‑M2/6‑100 (MQ=255)
                                                                                               cggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCGAGCGTGCGTTTCTTGTAGTCTTCGTACTCgg     <  1:2185876‑M2/96‑1 (MQ=255)
                                                                                               cggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCgg     >  2:367086‑M2/5‑100 (MQ=255)
                                                                                               cggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCgg     <  2:2122362‑M2/96‑1 (MQ=255)
                                                                                                   |                                                                                                  
TGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAA  >  NC_000913/4628746‑4628943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.