| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2440284 = | 73 (0.980) | 8 (0.160) +GCGTTAGTGCCGGAGGCCGCATTGGCGCGTAAC |
3/132 | 9.7 | 14.2% | intergenic (‑164/+101) | yfcJ/fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| ? | NC_000913 | 3650712 = | NA (NA) | noncoding (1/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GCGTTGGCAGGATTTAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGA > NC_000913/2440191‑2440383 | gCGTTGGCAGGATTTAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAggg > 1:24358/1‑100 (MQ=255) cGTTGGCAGGATTTAACGCGTACGTCTTTTCAGAAGGAAATTGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGa < 2:459439/100‑1 (MQ=255) cGTTGGCAGGATTTAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGa > 1:1657143/1‑100 (MQ=255) ttGGCAGGATTTAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAAc < 1:1377859/100‑1 (MQ=255) gCAGGATTTAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAAc > 1:232901/1‑97 (MQ=255) gCAGGATTTAACGCGTACGTATTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGAGAATTTCAATGATGTGAAAAAGGGAACCAt > 1:44390/1‑100 (MQ=255) ggATTTAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑g > 2:524477/1‑100 (MQ=255) gATTTAACGCGTACGTCTTTTCAGAAGGAAATTGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑gg < 2:1024312/100‑1 (MQ=255) ttAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTc > 1:763906/1‑100 (MQ=255) tAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTcc > 1:1035072/1‑100 (MQ=255) tAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTcc < 2:597262/100‑1 (MQ=255) gcgTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCttt > 2:167493/1‑100 (MQ=255) cgTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCtttt > 1:1324232/1‑100 (MQ=255) cgTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACC‑TGATGGTTCCCtttt < 2:561807/100‑1 (MQ=38) tACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGc > 2:1022729/1‑100 (MQ=255) tACGTCCTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTTCCTGGAACTGGCGGTGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGc < 1:212797/100‑1 (MQ=255) cGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGt > 1:859255/1‑100 (MQ=255) ttttttTATAAGGAAATTGACAAAGCGGTAAGTTTGTCTGGAACTGGCGGCGATTGTCAATTCTGTGAAAAAGTTAACTTGAT‑GGTTCCCtttttcacat < 1:975248/98‑7 (MQ=255) tttCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTg < 2:1539050/100‑1 (MQ=255) cAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCg > 2:1715365/1‑100 (MQ=255) aGAAGTAAATCTACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATTATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCgg < 1:141149/100‑1 (MQ=255) aaGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAg < 2:318743/100‑1 (MQ=255) aGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAgg > 2:303490/1‑100 (MQ=255) aaTCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGc > 1:1771172/1‑100 (MQ=255) aTCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCa < 2:1659124/100‑1 (MQ=255) gtcAAAGCGGGAAATTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTg > 2:1230699/3‑100 (MQ=255) gACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTg > 2:238960/1‑100 (MQ=255) gACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTg > 2:235505/1‑100 (MQ=255) aCAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTgg > 2:1582021/1‑100 (MQ=255) aaaGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGgcg > 1:734267/1‑100 (MQ=255) gCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGt > 1:179882/1‑100 (MQ=255) gCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGt > 2:1711919/1‑100 (MQ=255) gggAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTaa < 2:734271/100‑1 (MQ=255) ggAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAAc > 2:180222/1‑100 (MQ=255) tGCCTGGAACTGTCGGCGAATGTCAATGATGTGAAAAAGAGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGAAGGCCGCATTGACGCGTAACGTCGGAt > 1:219303/1‑100 (MQ=255) gCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATg > 2:549783/1‑100 (MQ=255) gCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAAGCCGCATTGGCGCGTAACGTCGGATg > 2:113332/1‑100 (MQ=255) cTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCg < 2:1557398/100‑1 (MQ=255) cTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCAGAGACCGCATTGGCGCGTAACGTCGGATGCg > 1:1520647/1‑100 (MQ=255) ggAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAATCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGAGCGTAACGTCGGATGCGAc < 1:989867/100‑1 (MQ=255) aCTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCt < 2:1345051/100‑1 (MQ=255) cTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTg > 1:887645/1‑100 (MQ=255) cTGGCGGCGATTGGCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTg > 2:1220217/1‑100 (MQ=255) tagcggcgATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTgg > 2:1223989/3‑100 (MQ=255) tGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTgg < 2:1126382/100‑1 (MQ=255) ggcggcGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGgc > 1:1658657/1‑100 (MQ=255) ggcggcGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGgc > 1:1404062/1‑100 (MQ=255) ggcggcGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCAGAATTGGCGCGTAACGTCGGATGCGACGCTg > 2:523146/1‑98 (MQ=255) ggcgTTTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCCTTGGCGCGTAACGTCGGATGCGACGCTGGcgcg < 1:1022719/100‑1 (MQ=255) ggcgATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGcgcg > 1:1619528/1‑100 (MQ=255) cgATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGgcgc > 1:818046/1‑97 (MQ=255) cgATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTc < 1:1130610/100‑1 (MQ=255) gATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCt > 2:240330/1‑100 (MQ=255) gTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTc > 2:1173876/1‑100 (MQ=255) gTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTc > 1:314802/1‑100 (MQ=255) gTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTc > 1:694838/1‑100 (MQ=255) gTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTc < 2:24358/100‑1 (MQ=255) tCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTc > 2:1689873/1‑99 (MQ=255) aaTGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGa < 1:680962/100‑1 (MQ=255) atgatgTGAAAAAGGGATCCATCA‑GGTTTCTTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGa < 2:232902/99‑1 (MQ=255) tgatgTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGAcc < 2:1439021/100‑1 (MQ=255) atgTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTa > 1:1011396/1‑100 (MQ=255) gtgAAAAAGGGAACCATCA‑GGTTCCTTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACt < 2:851802/100‑1 (MQ=255) gtgAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGAATGCGACGCTGGCGCGTCTACTCCGACCTACt > 1:630256/1‑100 (MQ=255) tgAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTg > 2:305158/1‑100 (MQ=255) tgAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTg > 1:1821698/1‑100 (MQ=255) tgAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTg > 2:1555175/1‑100 (MQ=255) gAAAAAGGGCACCATCA‑GGTTCCCTTTTGCGATAGTGCAGAAGGCCGCAATGGCGCGTAACGTCGTATGCGACGCTGGCGCGTCTACTCCGACCTACTGc > 1:1483148/1‑100 (MQ=38) gAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGc > 1:1773745/1‑100 (MQ=255) aaaaaGGGAATCATCA‑GGTTCCCTTTTGTGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCg < 2:550751/100‑1 (MQ=255) aaaaaGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCg < 2:1709551/100‑1 (MQ=255) aaaaaGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCg > 1:177139/1‑100 (MQ=255) aaaaaGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCg < 1:1220206/100‑1 (MQ=255) aaaaGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGa < 1:549779/100‑1 (MQ=255) aaaaGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGa > 2:1110580/1‑100 (MQ=255) | GCGTTGGCAGGATTTAACGCGTACGTCTTTTCAGAAGGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCA‑GGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGA > NC_000913/2440191‑2440383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |