| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 26.2% | 207.9 / 73.1 | 107 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (41/38); new base C (26/2); total (67/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.35e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-01 | |||||||||||
Only 100 of 109 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 | gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 2:1681662/100‑1 (MQ=255)gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:297678/1‑100 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 1:821922/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 1:1236090/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:264075/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 1:1702187/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGTGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:677213/100‑1 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaaa > 2:1256370/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaaa > 2:1068255/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaacaa < 1:1763549/100‑9 (MQ=25) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCCTGGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaaa > 1:58529/1‑99 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCg < 1:1100084/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCg < 2:1149932/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGAATCCGGCGTTAACACCTTATCCGGCCTACAAAATCg > 2:592340/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 2:734117/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc < 2:706941/100‑1 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAAt < 1:1606729/100‑1 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAAtt > 2:1523415/1‑100 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAAtt > 2:1532130/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 2:488539/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 2:1680175/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 2:1309767/1‑100 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa < 2:1476944/99‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAt < 2:338379/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATAc < 1:1032586/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATAc < 1:1033347/100‑1 (MQ=255) cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATAc < 2:1047255/99‑1 (MQ=255) cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACa > 2:911581/1‑100 (MQ=255) aCCGGGGATAGAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGc < 1:143326/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑g > 1:1762033/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑g < 2:541449/100‑1 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑Ga > 1:503843/1‑100 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑Gaa > 2:1191166/1‑100 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt < 2:170582/100‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCGGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt‑t < 1:620334/100‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt‑t < 1:595451/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt‑t‑‑tt > 1:234890/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCg < 1:1744610/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTa > 1:1403868/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGc < 2:1740260/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGcc > 1:1169348/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGcc > 1:103363/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGa > 2:1340399/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGa < 2:1702200/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATa > 2:901313/1‑100 (MQ=255) aaaGTGCTCTTTGTTTATGCCGGATGCGGCGTTAAAGGCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATa > 1:1055188/1‑99 (MQ=255) aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATaa > 1:1055189/1‑100 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGc < 1:520659/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAg < 1:679691/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAg > 1:1010374/1‑100 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAg < 1:1536712/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAgc < 1:363970/100‑1 (MQ=255) tgatttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑T‑‑TATGTAGGCCTGATAAGCGTAgcgc > 1:551126/11‑100 (MQ=18) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAgcg > 2:1438777/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAgcg > 2:1548186/1‑100 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCa > 1:10159/1‑100 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCa < 2:1631715/100‑1 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCa < 2:1037093/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCa < 2:1144574/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCa < 1:874024/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCa < 1:59568/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCa < 1:59539/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACATGCAAATTCAATAGATTGC‑‑A‑GAGA‑T‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAg > 1:311414/5‑100 (MQ=17) taggCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAgg > 1:424834/4‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGC‑‑ATGGGC‑C‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:576835/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑T‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1304631/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑T‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAAGc > 2:1127876/3‑100 (MQ=14) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAACAGTGCAAATTCAATATATTGC‑‑A‑ATCT‑T‑‑CTGGTAGGCCTGATAAGCATCGCGCATCAGGc > 2:1387766/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGA‑‑T‑CGAT‑C‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:80290/3‑99 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTGC‑‑A‑GGAT‑A‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:863322/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑T‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1016666/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑T‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1634581/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑T‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:371322/3‑100 (MQ=21) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:1423901/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:353382/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCA‑A‑TTCA‑A‑‑CTTGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:1356032/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGC‑‑A‑‑ATT‑CAACTAATAGGCCTGATAAGCGCAGCGCATCAGGc > 2:1382502/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGC‑‑A‑AGAT‑T‑‑TTCGTAGGCCTGATAAGAGTAGCGCATCAGGCa > 2:1792775/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTTTGCAAATTCAATATATTGC‑‑A‑ATCT‑C‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:972699/2‑100 (MQ=18) gtcggataaggcgTTCACGCCGCATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGC‑‑A‑GGAA‑C‑‑GATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:1383905/10‑99 (MQ=21) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGC‑‑A‑GAAA‑C‑‑CTTGTAGGACTGATAAGAGTAGCGCATAAggaa > 2:785541/1‑97 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGAAATCGTGCTAATTCAATATATTGT‑‑G‑GGCT‑C‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1642074/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑A‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 1:466815/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAACCGCGCAAATTCAATATATTGCGGA‑GAAA‑A‑‑T‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctgt > 2:1815709/1‑97 (MQ=21) ccggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGC‑‑ATGGGC‑C‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1461589/9‑98 (MQ=17) cGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 2:418232/1‑100 (MQ=255) cGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:729353/1‑99 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑T‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1562793/7‑100 (MQ=17) ggataaggcgTTTACGCCGCAACCGGCCTACAAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GAATCC‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 1:1809809/7‑98 (MQ=18) ggataaggcgTTCACGCCTTATCCGGCCTACAAAATCGCTTAAATTCAATATATTGC‑‑A‑CAAT‑A‑‑CTCGTAGGCCTAATAAGCGTAGAGCATCAGGCaat > 2:228972/7‑96 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGC‑‑A‑AGAT‑T‑‑TTCGTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 2:1450541/7‑96 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTGC‑‑A‑GGAA‑A‑‑CACGTAGGCCTGATAAGCGAAGCGCATCAGGCAgttt > 2:128892/7‑100 (MQ=18) ggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:142002/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:1523404/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:138339/100‑1 (MQ=255) tAACGCCTTATCCGACCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:1143213/1‑100 (MQ=255) aCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1449394/100‑1 (MQ=255) cGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa < 2:37410/100‑1 (MQ=255) tATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt > 2:653818/1‑100 (MQ=255) tATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTAtt > 2:930055/1‑100 (MQ=255) | GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑T‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |