BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,706,048	0	G	T	21.7%	268.7 / 53.3	110	intergenic (‑258/+50)	dppB/dppA	dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
Reads supporting (aligned to +/- strand): ref base G (38/45); new base T (22/1); total (64/46)
Fisher's exact test for biased strand distribution p-value = 7.82e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 116 total aligned reads displayed.

CGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCA  >  NC_000913/3705951‑3706147

cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAg                                                                                                   <  1:679691/100‑1 (MQ=255)

cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAg                                                                                                   >  1:1010374/1‑100 (MQ=255)

cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAg                                                                                                   <  1:1536712/100‑1 (MQ=255)

 gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAgc                                                                                                  <  1:363970/100‑1 (MQ=255)

  cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAgcg                                                                                                 >  2:1438777/1‑100 (MQ=255)

  cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAgcg                                                                                                 >  2:1548186/1‑100 (MQ=255)

    ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCa                                                                                               >  1:10159/1‑100 (MQ=255)

    ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCa                                                                                               <  2:1037093/100‑1 (MQ=255)

    ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCa                                                                                               <  2:1631715/100‑1 (MQ=255)

       tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCa                                                                                            <  1:874024/100‑1 (MQ=255)

       tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCa                                                                                            <  2:1144574/100‑1 (MQ=255)

       tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCa                                                                                            <  1:59568/100‑1 (MQ=255)

       tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCa                                                                                            <  1:59539/100‑1 (MQ=255)

        gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACATGCAAATTCAATAGATTGC‑‑A‑GAGA‑TTATGTAGGCCTGATAAGCGTAGCGCATCAg                                                                                           >  1:311414/5‑100 (MQ=17)

         taggCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAgg                                                                                          >  1:424834/4‑100 (MQ=18)

          aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGC‑‑ATGGGC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                         >  1:576835/3‑100 (MQ=17)

          aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                         >  1:1304631/3‑100 (MQ=17)

          aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAAGc                                                                                         >  2:1127876/3‑100 (MQ=14)

          aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAACAGTGCAAATTCAATATATTGC‑‑A‑ATCT‑TCTGGTAGGCCTGATAAGCATCGCGCATCAGGc                                                                                         >  2:1387766/3‑100 (MQ=18)

          aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGA‑‑T‑CGAT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAgg                                                                                          >  2:80290/3‑99 (MQ=18)

          aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTGC‑‑A‑GGAT‑ACGTGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                         >  2:863322/3‑100 (MQ=17)

          aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                        >  1:1634581/3‑100 (MQ=21)

          aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                        >  1:1016666/3‑100 (MQ=21)

          aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                        >  1:371322/3‑100 (MQ=21)

           tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa                                                                                        >  2:353382/1‑100 (MQ=255)

           ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCA‑A‑TTCA‑ACTTGTAGGCCTGATAAGCGCAGCGCATCAGGc                                                                                         >  2:1356032/2‑100 (MQ=18)

           ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGC‑‑A‑AGAT‑TTTCGTAGGCCTGATAAGAGTAGCGCATCAGGCa                                                                                        >  2:1792775/2‑100 (MQ=17)

            gtcggataaggcgTTCACGCCGCATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGC‑‑A‑GGAA‑CGATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa                                                                                       >  2:1383905/10‑99 (MQ=21)

            gCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGC‑‑A‑GAAA‑CCTTGTAGGACTGATAAGAGTAGCGCATAAggaa                                                                                        >  2:785541/1‑97 (MQ=17)

            gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGAAATCGTGCTAATTCAATATATTGT‑‑G‑GGCT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCag                                                                                       >  2:1642074/1‑99 (MQ=18)

            gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTT‑ATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaa                                                                                       >  1:466815/1‑99 (MQ=21)

            gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAACCGCGCAAATTCAATATATTGCGGA‑GAAA‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctgt                                                                                      >  2:1815709/1‑97 (MQ=21)

            aaagcacctggcgGTCACGCCGCATCCGGCCTACGAAACCGCAAGAATTCAATATATTGC‑‑A‑GGAG‑CGGTGTAGGCCTGATAAGCGTAGCGCATCAAGCag                                                                                       <  1:799084/91‑2 (MQ=18)

             ccggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGC‑‑ATGGGC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat                                                                                      >  1:1461589/9‑98 (MQ=17)

              cGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt                                                                                     >  2:418232/1‑100 (MQ=255)

              cGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt                                                                                      >  2:729353/1‑99 (MQ=255)

               ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGC‑‑A‑GAGT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt                                                                                    >  1:1562793/7‑100 (MQ=17)

               ggataaggcgTTTACGCCGCAACCGGCCTACAAATTC‑TGCAAATTCAACAAATTGC‑‑‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg                                                                                    >  1:1809809/7‑98 (MQ=18)

               ggataaggcgTTCACGCCTTATCCGGCCTACAAAATCGCTTAAATTCAATATATTGC‑‑A‑CAAT‑ACTCGTAGGCCTAATAAGCGTAGAGCATCAGGCaat                                                                                      >  2:228972/7‑96 (MQ=17)

               ggataaggcgTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGC‑‑A‑AGAT‑TTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCacgct                                                                                    >  2:1450541/7‑96 (MQ=17)

               ggataaggcgTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTGC‑‑A‑GGAA‑ACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAgttt                                                                                    >  2:128892/7‑100 (MQ=18)

                     ggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt                                                                              >  2:142002/1‑100 (MQ=255)

                       cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg                                                                            <  1:1523404/100‑1 (MQ=255)

                       cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg                                                                            <  1:138339/100‑1 (MQ=255)

                          tAACGCCTTATCCGACCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa                                                                         >  1:1143213/1‑100 (MQ=255)

                            aCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc                                                                       <  2:1449394/100‑1 (MQ=255)

                             cGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa                                                                      <  2:37410/100‑1 (MQ=255)

                                cTTATCCGGCCTACAAAATCGTGCAACTTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAACGCATCAAACATATTTGCCTTTGCCATAAGt                                                                    >  2:179884/1‑99 (MQ=18)

                                  tATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt                                                                 >  2:653818/1‑100 (MQ=255)

                                  tATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTAtt                                                                 >  2:930055/1‑100 (MQ=255)

                                       ggCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg                                                            <  2:1029579/100‑1 (MQ=255)

                                       ggCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg                                                            <  1:1217016/100‑1 (MQ=255)

                                       ggCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg                                                            >  1:612694/1‑100 (MQ=255)

                                         ccTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc                                                          >  1:270071/1‑100 (MQ=255)

                                           tACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtt                                                        <  1:488536/100‑1 (MQ=255)

                                            aCAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt                                                       >  1:1734368/1‑100 (MQ=255)

                                            aCAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt                                                       <  2:821927/100‑1 (MQ=255)

                                             cAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt                                                      >  2:267228/1‑100 (MQ=255)

                                              aaaaTCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt                                                       <  2:725726/98‑1 (MQ=255)

                                              aaaaTCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTa                                                     >  2:1197515/1‑100 (MQ=255)

                                                aaTCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat                                                   <  1:418230/100‑1 (MQ=255)

                                                   cGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattat                                                <  2:1595442/100‑1 (MQ=255)

                                                   cGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattat                                                >  2:1359952/1‑100 (MQ=255)

                                                    gTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt                                               >  1:1365725/1‑100 (MQ=255)

                                                    gTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt                                               >  1:43705/1‑100 (MQ=255)

                                                     tggaaaTTCAATATTTTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGGGCATGAGTCATTTTTGCCGTTGCCAGCAGTCTTGTATGGCTTTTAattatt                                               >  1:535860/4‑99 (MQ=21)

                                                     tGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc                                              <  2:1323028/100‑1 (MQ=255)

                                                     tGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc                                              >  2:1064277/1‑100 (MQ=255)

                                                     tGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc                                              <  1:1545952/100‑1 (MQ=255)

                                                     tGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc                                              <  1:1116818/100‑1 (MQ=255)

                                                        aaaTTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg                                             <  2:386828/98‑1 (MQ=255)

                                                          aTTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATCTTTGCCTTTGCCATCAGACTTGTATGGCTTCTAATTATTCGATag                                         >  2:153876/1‑100 (MQ=255)

                                                            tCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGTCTTTGTTATCAGTCTTGTATGGCTTTTAATTATTCGATagag                                       >  1:112416/1‑100 (MQ=255)

                                                              aaTACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGAc                                     >  2:814202/1‑100 (MQ=255)

                                                               aTACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACg                                    <  1:446361/100‑1 (MQ=255)

                                                                   aTTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGtttt                                <  1:67366/100‑1 (MQ=255)

                                                                     tGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCg                              <  1:510144/100‑1 (MQ=255)

                                                                     tGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCg                              <  1:1532119/100‑1 (MQ=255)

                                                                      gC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa                             <  2:1683426/100‑1 (MQ=255)

                                                                             aaT‑TTTCGTAGGTCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg                         <  2:12707/100‑1 (MQ=255)

                                                                             aaT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg                         >  1:958546/1‑100 (MQ=255)

                                                                               t‑tttCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGAt                       >  1:1545115/1‑100 (MQ=255)

                                                                                 tttCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATg                      <  2:538254/100‑1 (MQ=255)

                                                                                       aGGCCTGATAAGCGGAGCGCATCAGGCAGTTTTGCCTTTGCCATCAGTGTTGTATGGCTTTTAATTATTCGATAGGGACGTTTTTGAAGTGATGTTTGcc                <  1:394560/100‑1 (MQ=37)

                                                                                        ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCt               <  2:103363/100‑1 (MQ=255)

                                                                                        ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCt               >  2:1747003/1‑100 (MQ=255)

                                                                                        ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCATGTATGGCTTATAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCt               >  1:1139050/1‑100 (MQ=255)

                                                                                           cggATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAAt            <  2:1638169/98‑1 (MQ=255)

                                                                                            tGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATg           <  1:142002/100‑1 (MQ=255)

                                                                                            tGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATg           >  2:522465/1‑100 (MQ=255)

                                                                                             gATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATgg          >  1:780145/1‑100 (MQ=255)

                                                                                              aTAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGa         >  2:1347338/1‑100 (MQ=255)

                                                                                                aaGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATTGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATc       <  1:755050/100‑1 (MQ=255)

                                                                                                aaGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATc       <  2:1010384/100‑1 (MQ=255)

                                                                                                   cGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCaa     >  2:549640/1‑99 (MQ=255)

                                                                                                    ggAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAcc   <  1:353380/100‑1 (MQ=255)

                                                                                                    ggAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAcc   <  1:267227/100‑1 (MQ=255)

                                                                                                    ggAGCGCATCAGACATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAcc   <  1:1263623/100‑1 (MQ=255)

                                                                                                     gAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACca  <  2:424836/100‑1 (MQ=255)

                                                                                                     gAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACca  <  2:1685362/100‑1 (MQ=255)

CGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCA  >  NC_000913/3705951‑3706147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`