Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG26.9% 341.7 / 74.4 310R661R (CGA→CGC) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (65/153);  new base G (7/73);  total (83/227)
Fisher's exact test for biased strand distribution p-value = 1.07e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 311 total aligned reads displayed.

GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTT  >  DH1/2169429‑2169722
                                                                                                                                                    |                                                                                                                                                  
gTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCt                                                                                                                                                    <  3:1754908/149‑1 (MQ=255)
   gttctGGTACCTCATTAGCCTGTTGCTGGTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGc                                                                                                                                               <  4:35346/150‑1 (MQ=255)
       gggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATa                                                                                                                                           <  5:404595/150‑1 (MQ=255)
        ggTACCGCATTAGCCTGCTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAg                                                                                                                                          <  7:1890440/151‑1 (MQ=255)
          gaCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg                                                                                                                                        <  1:583326/150‑1 (MQ=255)
              ggatgaGCCTGGTGCTGTTGCAGCTTGTGTGCTTTGGCGCGTGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGGGCGCTTTGGCTCGTGCAATAGCGGCtt                                                                                                                                    <  1:1250727/146‑1 (MQ=21)
                aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCTCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                  <  2:664246/151‑1 (MQ=255)
                  tAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGa                                                                                                                                 <  1:1483698/150‑1 (MQ=255)
                  aaGCCTGGTGCTGTTCGCGGTTGCGTGCGTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                <  7:2260243/150‑1 (MQ=17)
                   aGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCGGCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                <  6:2112860/150‑1 (MQ=255)
                   aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCGATAGCTGCTTCGACGGCGGGTTTGCGAGGATCGGCAAGGTGTTCTGGTTCGTGATTATCCTGTTGCTGGTAACCGGTGCGCGCTGTGGTCCCGGCACTAGAGGGTTCCAcg                                                                                                                               >  5:824095/1‑151 (MQ=0)
                   aGCCTGCTGCTGGTCCAGCTTGCGTGCTTTTGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcg                                                                                                                               <  4:440781/151‑1 (MQ=255)
                   aGCCGGTAGCTGTTCCCGCTTGCGTGCGTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                                <  5:377468/150‑1 (MQ=255)
                     ccTGTTGCTGTTCCAGCTTGCGTCCATTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCTCGGATCAACCTGATCTTCTGGATCAGAATTAGCCTGTTGCTGTTCCAGGATCCGAGCTGAGGCGGGGGCCAAAGCCGCTTCGAcggc                                                                                                                             >  8:631206/1‑151 (MQ=2)
                     ccTGGTGCTGTGCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                             <  7:1523799/151‑1 (MQ=255)
                      cTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGCGCCTACGGCTGAGGTGCTGTCTGAGCAGTAGGCGGTTGAGGTGAGCGGTTGAGGGCTGTGGCTCGGGCAATATCGGCTTCGCcggcg                                                                                                                            >  5:1981721/1‑151 (MQ=9)
                       tGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg                                                                                                                           >  7:1284692/1‑151 (MQ=255)
                        ggtGCTGTGCCAGCTTGCGGGCCTTCGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACggcggc                                                                                                                          <  5:1167213/149‑1 (MQ=17)
                        gTTGCTGTTCCCGCTTTCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                                            <  3:335215/149‑1 (MQ=255)
                          tGCTGTTCGTGTTTGTGTGCTTGAGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCt                                                                                                                         <  6:973193/150‑1 (MQ=17)
                           gCTGTTCGTGGTTGCGTGCTTTTGCGCGTGCAATAGCCGCTGCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                       <  4:625059/151‑1 (MQ=17)
                           gCTGTTCGAGGTTGCGTGCTTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                       <  4:886202/151‑1 (MQ=255)
                            cTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTAAGCGAATCGCCCAGTTGTTCTGAATCCGCATTAGCCGGTTGCTGTTCACGGTTGCGCGCGTTGGCTAGAGCAAAAGCGGCTTCGACGGCGGCtggg                                                                                                                      >  2:300694/1‑148 (MQ=14)
                              gTTCCCGCTTGTGTGCTTTTGTGCGGGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTgcg                                                                                                                    <  6:118129/151‑1 (MQ=17)
                               ttCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGCAAGCTGCGTCTGGTTCCGGATTATCAGTTTGCGGTTCCCGGTTGCGCGGTTTGGCTCGGGCAATAGAGGCTTCGCCGGCGGCGTTgcgg                                                                                                                   >  1:1922014/1‑150 (MQ=2)
                               ttCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTGCTGGCTCCCAATTAGCCGGTTCCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGttggggg                                                                                                                   >  7:391585/1‑146 (MQ=17)
                                gcctgCTTGATTGCCTTCGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg                                                                                                                  <  8:1914943/147‑1 (MQ=17)
                                 cccgCTTGCGTGCTTTTGCTCTTTCAATAGCCGCCTCGACGGCAGATCTGCTCTGATCAACATGCTCTTCTCGTTCCGGACTCGCCTGCTCCCTTTCCAGCTTGCGCGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                                                                                   <  2:1917237/146‑1 (MQ=2)
                                   cggttGCGTGCGTTGGCGCGTGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTCCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                               <  4:1726827/148‑1 (MQ=17)
                                   aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt                                                                                                               <  7:2049884/151‑1 (MQ=255)
                                    gCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                              <  5:265022/151‑1 (MQ=255)
                                    cgttgcttgcTTTCGCGCGTGCAATAGCCGCTGCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                              <  2:988006/149‑1 (MQ=255)
                                       tGCGTGCTTTGGCGCGTGCAATAGCCGCGTCTACTGCAGCTTTCCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCg                                                                                                             <  6:1603172/149‑1 (MQ=17)
                                           tGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGGTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCAGGTTTGCGCGGATctgcctcg                                                                                                       >  7:583825/1‑144 (MQ=14)
                                           tGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGAGCGGATCAACCTGTTCTTGTGGCTACGCATTAGACGGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGTGCAATAGAGGCTTCGACGGCGGCTTTGCGCgggggggcgggt                                                                                                       >  6:38400/1‑141 (MQ=17)
                                             ccttcgcgcGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑tgttg                                                                                                    <  1:1036887/146‑1 (MQ=255)
                                               ttGGCGCGTGCAATAGCCGCGTCGACGGCAGCCTTGCGCGGAGCAACCCGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑tgttg                                                                                                    <  7:1933767/149‑1 (MQ=255)
                                                tGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑Tgttgtt                                                                                                  <  1:1847920/150‑1 (MQ=255)
                                                 ggCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCt                                                                                                <  3:1104143/151‑1 (MQ=255)
                                                 ggCGCGGGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGAGCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCt                                                                                                <  2:1710766/151‑1 (MQ=14)
                                                    gcgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGGCCTGTGCTACTGGGTCCGGAGTCGCCGGTAGCTGTTGCCGGTTGGGCGCTTTGGCGCGGGCAATAGAGGCTTCGACGGCGGCTTTGCGCGGAGCggcggggggggggggg                                                                                              >  1:97538/1‑136 (MQ=9)
                                                     cgTGCAATAGCGGCTTCGAGGGCAGGCTGACGCGGTGGAAGCCGATCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCt                                                                                            <  3:1634301/151‑1 (MQ=14)
                                                       tGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGATTGAGATCGGAAGAGCGTCCAATAGCGCAATCGACGGAGGCGATGAGCTGATCGCCC‑tgttgtgcgtaca                                                                                            >  2:2219347/1‑142 (MQ=9)
                                                        ttaaTCGCCGCTTCGAGTGCTTCTTTGGGGTTATCAATCTTTTCTTCTTGGTCGCTATTAGGATGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACC‑TGTTCTTCTGGTTcc                                                                                          <  2:1517568/148‑2 (MQ=2)
                                                        gCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTCCGCGGATCGAAC‑AGTTGTTCTGGCTCgg                                                                                         >  4:756094/1‑151 (MQ=14)
                                                         cAATAGCCGCGTCTACTGCAGCGTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGc                                                                                        <  1:323917/151‑1 (MQ=255)
                                                          aaTAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGGTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGTCa                                                                                       <  1:79158/151‑1 (MQ=255)
                                                          aaTAGCCGCGGCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCa                                                                                       <  3:2128067/151‑1 (MQ=255)
                                                                cGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTATGGCTCCGCATTAGCCGGGTGCTCTTCACGGTTTCGAGCGGTGGGGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGCTCGCGC‑GGTTGTTCGGGcgggggcggggcg                                                                                 >  1:1764638/1‑139 (MQ=2)
                                                                cGCTTCCACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCGCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGGGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGcc                                                                                 <  3:823044/151‑1 (MQ=255)
                                                                 gcggccactgCAGCGTTGCGCTGATCATCCTGTTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCGCGTTTGCGGGCGTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCt                                                                                <  5:1443218/142‑1 (MQ=11)
                                                                  gtgcaaCGGCAGAGTTGCGCTGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGGGCCCGTTTGCTCGCCTGTGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTg                                                                               <  2:2090367/146‑1 (MQ=14)
                                                                    tcaaCGGCAGCTTTGCGCGGATCAACCTGTGCTTCTGGCTCCGCAATAGCCTTTTGCTGTTCCCGTTTGCTCGCGTTGGCGCGGGCAATAGCGGCGGCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGt                                                                              <  3:1955911/147‑1 (MQ=14)
                                                                       actgccgCTTTGCGCTGAGGAACCTGCTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCGCGTTTGCGGGCTTTCGCTCGGGCAATAGCCGCTTCTACGGCCGCTTTGCGCGGATCCACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                                          <  6:1015490/145‑1 (MQ=255)
                                                                       actgCAGCTTTGCTCGGAGCAACCTGGTCTTCTGGCTCCGCATTATCCTGGTGCTGTTCGCGTTTGCGGGCTTTCGCGCGGGCAATAGCGGCTGCTACGGCGGCTTTGCGCGGATCTACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTg                                                                            <  4:962051/146‑1 (MQ=255)
                                                                       aCGGCAGCTTTGCGCTGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                                          <  5:1749476/151‑1 (MQ=255)
                                                                       aCGGCAGCTGTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                                          <  5:1678958/151‑1 (MQ=14)
                                                                          gCAGCTTTGCGCGGATCAACCTGTGGTTCTCGAGACGCATTAGCCGTTGTCTGCTCTGGCTAGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGtt                                                                       <  7:1811619/151‑1 (MQ=11)
                                                                           gctcTTTGCTGGGATCATCCTGTGCTTCTGGCTCGGCTTTAGCCTGTTGCTGTTCGCGTTTGCTGGCTTTCGCGCGGGCAATAGCGGCTGCTACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTc                                                                      <  3:793480/148‑1 (MQ=14)
                                                                             gCTTTGCGCGGAGGAACCTGTTCTTCTGGCTCGGCTTTAGCCGGGTGCTGTTCGCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCTACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                    <  8:468092/151‑1 (MQ=17)
                                                                                tttctctgATCATGCTCTTCTTCTGTTTACGCATTTGCCTGTTTCTGTTCCCGTTTTCGAGGTTTTTCTGTTGTAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTcc                                                                     <  2:1078777/140‑1 (MQ=2)
                                                                                 tGCGCTTATCAACCTGGTCTTCTGGCTCCGCATTAGCCTGGTGCTGGTCGCGTTTGCGCGCTTGTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCt                                                                 <  7:1330415/150‑1 (MQ=14)
                                                                                  gcgcGGAGCTACGTGCTCTTCGGGCTCCGCTACAGCCGGGTGCTGGTCGCGTTTTCTCGCGTGGGCGCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt                                                                <  3:1818619/150‑1 (MQ=14)
                                                                                  gcgcGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCTCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt                                                                <  4:1123334/150‑1 (MQ=255)
                                                                                  cggctgtgctaCCTGTTCTTCTGGCTCCGTATTAGCCTGGTGCTGTGCCGGTTTTTTGGCTTTCGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCTACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt                                                                <  6:1699698/140‑1 (MQ=2)
                                                                                      ggATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGCCATAGCAC‑GACCGTCCATGTGGTTCAGCCTCGGGAGGACCCTGTTGCTCTTCGGGGTTGCggg                                                           >  8:2110776/1‑149 (MQ=2)
                                                                                      ccccccacccgcgcttctGGCACCGCATTAGCCTGTTTCTGTTCCAGTTTGCGCGCTTTGGCTCGTGCAATAGCGTCTTCTACGTCTGCTTTGCGCTGATGGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTg                                                           <  8:592913/138‑1 (MQ=11)
                                                                                         gcAACCTCGTCTTCTGGCTCCGCATTAGCCTTGTGCTGGTCCCCTTTGCTCGCGTTGGCGCGGGCAATAGCGGCTTCGACTGCCGCTTTGCGCGGATCGACC‑TGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCtt                                                        <  3:1355966/150‑1 (MQ=14)
                                                                                           aaCCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATAGACC‑GGTTGATCTGGCTCCGCATAAGCCTGTTCCTGTTCGACCTTGCGTGCTTTg                                                      >  7:535397/1‑151 (MQ=14)
                                                                                            aCCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc                                                                                                                                   >  7:316670/1‑74 (MQ=255)
                                                                                              gtGTTCATCTGGCTCCGCCTTACCCGGATGCGGTTACGGGTCGGGAGCTGAGCCGCGTGCTCTAGCGCGGTCTACTGCCGCTTTGCGCGGATCCACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCa                                                   <  3:414580/150‑1 (MQ=9)
                                                                                                gtagttctTGCTCCTGTTTAGCCTGGTGCTGTGCGCGTTTTCGGGCTTTTGCGCGGGCAATAGCGGCTTCTACGGCCGCTTTGCGCGGATCTACC‑TGTTGTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCAc                                                  <  8:1602527/146‑1 (MQ=11)
                                                                                                 ttcttcTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGAGATCGGGGGTTCGCCGGCCGGTAGGCCAGTCTCTACG‑TCTGGTTCTGGATCCGCTTTAGCCGGTTGATGTTACAGCTTGCGGGCTGTggggcgg                                                >  1:2179770/1‑146 (MQ=255)
                                                                                                  tcttctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGGTCGGCATTAGACTGTTGCTGTTCCAGCTTGCGTGCTTTGGcggggg                                               >  4:1884514/1‑146 (MQ=255)
                                                                                                    ttctGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGCCC‑TGGTGTGCTGGTTCCGGATTATCCTGTTGGTGTTCCTGCTTGGGTgggttgtgcggggg                                              >  5:2118218/1‑137 (MQ=11)
                                                                                                     tctGCCTCGGCATTAGCCTTGTGCTGTGCCCGTTTGCGCGCGTTGGCGCGGGCAATAGCCGCTGCCACTGCCGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACggg                                               <  1:258019/148‑1 (MQ=14)
                                                                                                      ctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGCCGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCGCggggcgg                                           >  7:491489/1‑147 (MQ=255)
                                                                                                        tgCTCCGGATTAGCCTGTTGCTGTTCCTGTTTTCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                          <  8:1296182/149‑1 (MQ=255)
                                                                                                         cctggccttgaGCCGGGTGCTGTTCCCCTCTGGGGGCGTGCGCGCGGGCAATAGCGGCTGCTACTGCCGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc                                        <  3:5975/141‑1 (MQ=14)
                                                                                                            ccccatacggcGGGTGCTGCACCCGTGTGCGCGCGGGCGCTCGGGCAATAGCCGCTGCGACTGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg                                       <  5:293721/139‑1 (MQ=14)
                                                                                                              gCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGGTTTGCGGGGATCGGCA‑TCATCTGGTAGGAGCGCAGTAGGGAGTTGCTGTTACAGATTCCGAGCTTTGGCGCGGGCTATAGCTGCtt                                   >  7:262877/1‑151 (MQ=255)
                                                                                                              gCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCAACGGCAGATTTACGAGGATCAGCA‑AATATATCTAGATCGTCATTATCCTATTGCTGTTCAAGCTAGCTGGATTTGTCTCTGGAAATAgattctt                                   >  8:837387/1‑145 (MQ=255)
                                                                                                               cATTTGCCTGTTGCTGTTCCCGGTGGCGGTCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTc                                  <  5:595714/151‑1 (MQ=14)
                                                                                                                attatccttttGCTGTTCCGGTTTGGTGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                 <  4:2242758/142‑1 (MQ=14)
                                                                                                                aTTAGCCGGTTGCTGTTCCCGGTTGCGAGCTATGGATCGCGCAATACAGGAGTCGACTGCGGCTTTCCGCGGATCGAAG‑TGGTGTTCTGGGTCGGCAATAGCCTGTTGCGGTTGCAGCTTGCGGGCTGGGGCGCggggagtgcgggcgtgg                                 >  5:185257/1‑137 (MQ=255)
                                                                                                                 ttagccttgtGCTGTTCGGGTTTGCTGGCTTGCGCGCGGGCAATAGCGGCTGCTACTGCCGCTTTGCGCGGATCTACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                                 <  2:847173/141‑1 (MQ=14)
                                                                                                                     gcttttGCTGTTCGGGTTTTTTGGCTTTTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                            <  6:732254/147‑1 (MQ=14)
                                                                                                                     ccGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                            <  7:897382/151‑1 (MQ=255)
                                                                                                                           gctggtcgggTTTTCGGGCTTTCGCGCGGGCAATAGCGGCTTCTACGGCCGCTTTGCGCGGATCTACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                      <  2:817410/142‑1 (MQ=14)
                                                                                                                           gCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTATCGCGGATCGACC‑TGTTATTCTGACTCGGCATTAGCCTGTTGATGTTCCAGATTGCGAGCTTTGGAAAAAAAAATAGCGGCTTCGACGGCGGCttt                      >  6:641878/1‑151 (MQ=14)
                                                                                                                             cgtgcccGTTTTCTTGCTTGGGCTCGTGCAATACCGGCATCGCCTGCAGCTTGTCGAGTTCAGACG‑TGTTCTGCTCCGTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgc                    <  3:984861/147‑1 (MQ=2)
                                                                                                                              gTTCGCGTTTTCTGGCGTTCGCTCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCTACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                   <  8:1943702/151‑1 (MQ=14)
                                                                                                                              gTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCCACGGCGGATTTACGGGGATCAACA‑ACTTTTTCTGCGTAGAAATTAACCTCTTCCTGTACCAGAATACTGGCTTTGGCTCGGGATATATCGGAttaaaccgaatcattaa                    >  8:769640/1‑135 (MQ=255)
                                                                                                                              gTTCCCGTTTGCGCGCTTTGGCTCGGAAAATAGCCGCTTCGACGGCGGATTTGCGCGGATCGACA‑TTTTGTTATTCGTAGGCATTAGAATCTTTAATTTAAAGCTTGCGAGCTTTGGCGCGGCGCGTAGCGGCGTCGGCGGCGGCttgggg                   >  8:349539/1‑147 (MQ=255)
                                                                                                                                tCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGATCCGCATTAGCCTGTTGCTATTACAGATTGCCTTCTTTTGCAATAGCAATAGATCCTACGACTACAGCTTTgcggg                 >  6:2192441/1‑149 (MQ=11)
                                                                                                                                gccgggttGCGGGCCTGGGCGCGGGCAATAGCCGCTTCGACTGCCGCTTTGCGCGGATCTACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg                 <  7:701156/145‑1 (MQ=14)
                                                                                                                                    gTTTGCTGGCTTGTGCGCGGGCAATAGCGGCGTCTACTGCGGCTTTGCGCGGATCTACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc             <  7:1179440/151‑1 (MQ=14)
                                                                                                                                      ttGCGCGCTTTGGCTCGGGCAATAGCTGCTACGACGGAGGCTGTTCGGGGATCGAAA‑TCTTGTTATGGCTAGGCATTAGCAGGTTGCTGTTCCAGATTGATAAAATTGGCGCGGGCGATAGCGGCTTGggcggcggcggggcggggggggg           >  6:2031015/1‑137 (MQ=255)
                                                                                                                                          gttcTTTGGCTCTTTCAATAGTGGCTTCGACGGCGGTTTTGCGATGTTCAACC‑TGTTGTTCTGGATCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTg       <  8:1095063/148‑1 (MQ=11)
                                                                                                                                           cgcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAAGAGCGGCTTCGCCGGCGGCTTTGCGCGGGTCgcgctgg      >  5:870823/1‑145 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACC‑TGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTT  >  DH1/2169429‑2169722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑