| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 2,169,720 | 0 | C | G | 27.5% | 128.4 / 39.4 | 125 | E614Q (GAA→CAA) | rsxC | electron transporter RsxC |
| Reads supporting (aligned to +/- strand): ref base C (51/36); new base G (31/2); total (86/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.27e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 135 total aligned reads displayed.
TTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGC‑GCGCTTTGGCGCGGGC > DH1/2169571‑2169870 | ggaggCGCGGGCAATAGCGGCGGCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGttct < 5:149814/148‑1 (MQ=11) ggCTCGTGCAATAGCCGCTGCCACGGCCGCTTTGCGCGTATCGACCTGTTCTTCTGGCCCGGCATTAGCCTGTTGCTGTTCGTGCTTGCTTGCGTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTtcttct < 5:795546/151‑1 (MQ=11) ggCGCGGGCAATAGCGGCTGCAACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTGCCCGCTTGCGTGCTTTCGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTtcttct < 1:514654/151‑1 (MQ=14) cGGGCAATAGCCGCGGCGACGGCGGCTTTGCGCGGATGCAGCTGTGCTTCTGGGTCAGAATTAGCCTGTTGCTCTTGGCGGTTGCGTGCGTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGtt < 1:233536/151‑1 (MQ=11) ggCAATAGCGGCGTCCACTGCGGATTTTCGCTGATCGACCTGTTGTTCTGGCTCGGCATTATCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTcc < 7:34601/151‑1 (MQ=14) ccccccgcgcccccGACCGCCGCTTTGCGCGGATCTACTTTTTTTTATGTTACGGCATTACCCTTTTGCTCTTCATTGTTGCTTTCTTTTTCACTTGAATTAGCTGTTTCGATGTCCGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCg < 4:1104457/138‑1 (MQ=2) cGGCTTCGAAGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGAT‑CGACCTGTTGTTCTGGTTCCTCATTatc > 4:1273679/1‑149 (MQ=255) ggCTTCGACGTCTGCTTTTCTTTGATCGACCTTTTTTTCTTTCTCGTCTTTATTCTGTTGTTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGAT‑CGACCTGTTGTTCTGGTTCCGCATTAGcc < 6:159925/151‑1 (MQ=11) gACGGCGGCTTTGCGCGGATGGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGATTTTCGAGGAT‑CGCCAACTTGTTCTGGTTCCTGATTATGC‑TGTTg > 1:90960/1‑150 (MQ=11) atggcttcTTTTCGCGGATCCTATTTTTTTTCTTGCTCGTTTTTAGCCTTTTGCTGTGCGTGTTTTTTGGCTTGTGCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGc < 2:373073/143‑1 (MQ=2) gccgcTTTGCGCGGATCTTTTTGTTTTTGTTGCTCGGCATTAGCCTTTTGCTCTTACATCTTTCTTTCTTTGGCTAGTGGAATATCTTCTTATATGGCTGCTTTGCGCGGAT‑CTACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGtt < 8:7698/148‑1 (MQ=9) cggcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGCGGAT‑CGCCATGTGGTGCTGGTTCGTGATTATCC‑TGTTGCTGTTc > 1:26268/1‑151 (MQ=11) ggtttGCGCTGATCTTCATCGTGTTGTGGTTCCGCAGTAGCCTGGTGCTGGTCGCGGTTTCTGGCGTTCGCTCGGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCa < 7:350542/149‑1 (MQ=0) gcTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGAT‑CGCCCAGGTGTTCTGCTTCGTGAGTATCC‑TGTAGGTGTTcc > 3:385057/1‑150 (MQ=11) ttGCGCGGATCCACCTGTTGTTCTGGATCGGGATTAGCCTTTTGCTGATCCCTCTTGCTTGCGTTGTCTCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAg < 8:40387/149‑1 (MQ=14) ttcgcgGCTCAACCGGTTCTTCTGCCATCGCCTTAGCCTGTTGCTGTTCACGATGGTGTTCTTAGGTGCGGGCAATAGCCGCGGCTACTGCGGCTTTGCGCGGAT‑CTACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCt < 6:1098120/148‑1 (MQ=2) tGCGCGGATCGACCTCTTGTGCGCGCTCGGCATGACCCTGTGCCTGTTCCTGCTAGCCTGCTTTGGCCCGTGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCt < 7:326511/150‑1 (MQ=14) gcgcGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTGTTCTGGTTCGGCATTAGCC‑TGTTGCTGTTCCAGCTTg > 3:626742/1‑151 (MQ=255) cgcgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGTTTTGCGCGCAT‑GGACGAGATCTTGTGGGTCCTCATTAGAC‑TGATGCGCTTCCAGCTTgc > 1:645422/1‑151 (MQ=14) gcgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGAT‑CGCCCTCTTGTTCTGGTTCCGAATTAGCC‑TGATGCAGTTCAAGCTTgac > 8:283560/1‑149 (MQ=11) cgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGATTTACGCGGAT‑CCCCCTCTGGTGCTGCTTCCGTATTATCC‑TGTAGCTGTTCCAGCttcccc > 3:579250/1‑147 (MQ=11) cgGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCCCGGGCAATAGCTGCTTCGACGGCCGCTTTACGAGGAT‑CCCCATCTGATGCTGCGTCCGCAGTTTCC‑TGATGGTCTTCCAGCTTgccc > 5:265873/1‑149 (MQ=2) gACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCGGGTTTGCGCGGAT‑CGCCAACGGGTTCTGGGTCGGGAGTATGC‑TGTTGGTGTTCCAGCTTccgtggtt > 1:1127210/1‑144 (MQ=2) aCCTGTTCTTCTTGCTCGTCTTTAGCCTGCTGCTGTTCGCGCTTGATTGCTTTTGCGCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTgg < 4:406334/151‑1 (MQ=11) ccTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCGGCTTCCACGGCGGGTTTGCGTGGAT‑CGACATGGGGTTCTGCGTCGGGATTAGCC‑TGTTGGTGTTCCAGGTTgcgcgggtggtc > 4:1192506/1‑144 (MQ=11) gttgttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCCATAGCTGCTTCGACGGCGGCTTTCCGTGGAT‑CCCCCTGTAGTTCTGTATCGGCAATCGCG‑TCTTGCGATTCCATATTGCGCGGTTTGGCTCg > 3:608691/1‑151 (MQ=2) gttgttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCCATAGCTGCTTCAACGGCGGGTTTGCGGGGAT‑CAGCATGTTGTTCTGGTATCGGATGAGCA‑GGTTGCTGATAGCGATTGCGAACTTTGGCTCg > 5:680454/1‑151 (MQ=2) gtgcTGGCTCCGGATTAGCCGGGTGGGGAGCCAGCTGGCGTGCTGTGGCACTGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGGTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGc < 1:212893/148‑1 (MQ=11) ttCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGATTTGCGAGGAT‑CGGCCAGTTGTTCTGGTTCCGGATTATCC‑TGTTGGTGTTCCAGATTccgggaggtttccgcgta > 4:91245/1‑135 (MQ=11) cTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGAGCTTTGGCACGGGCAATAGCTGCTTCAACGGCCGGTTAGATCGGAA‑CACCGTCTTGTTCTGATACAGAATTACAC‑TGTTTCTGTTACACCTTGCGCGCATTAGCagttaaaa > 6:934679/1‑143 (MQ=2) gCTCGGGATGAGCCTGCTGCTGTGCGTGGTTTCGTGCTTTGGCGCGGGCAATAGCCGCGTCGACGGCGGCTTTGCGCGGAT‑CCACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGc < 7:998078/151‑1 (MQ=14) gtttttATCCTTTTGCTGGTCCCGTTTTCGTGCTTTAGCTCGTGCAATAGCCGCTTCTACTGCCTCTTTGCGCGGAT‑CTACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTTGCACGGGCAATAGCGGCt < 4:920503/147‑1 (MQ=11) ggCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCCGCTTTGCGAGGAT‑CGACCTGTTCTTCTGGTTCCGCATTATCC‑TGATGCTGTTCCAGCTTGCCCGCTTTGTCCCGGTCAATAGCTGcg > 7:260299/1‑150 (MQ=11) ggcttAGCCTGTCGCGGTTCCTGGCTGTGTGAGGTGTGACGGGCAATACGGGCTTGGAGTGCTGCTGTGCGCGGAT‑CTACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCtt < 2:225110/148‑1 (MQ=9) aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGAT‑CAACAAGTGATTCTGGTTCCGAATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTGAGGGCCGGGCAATAGCTGCttgg > 5:631008/1‑149 (MQ=11) ccTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGAT‑CGCCCTCGGGTTCTGGTTCCGGATTATGC‑TGTTGGTGTTCCAGGTTGCGGCGTTTGGCCGGGTCAATCGctgatagcccgcc > 5:746522/1‑139 (MQ=0) ccTGTTGCTGGTCGGGGTTGGTGGCTTGGGCGCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGAT‑CGACCTGTTGTTCTGGCTCGGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc < 3:231523/151‑1 (MQ=11) cTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGCCCTGTTGTTCTGCTTCCGCATTAGCC‑TGTTGCTCTTCCAGCTTGCGAGCTTTGGCACGGGAAATAGCTGCATCTActgc > 6:596728/1‑150 (MQ=11) gtggCTGTGCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGAcggcgg < 3:426743/147‑1 (MQ=255) ttGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGAT‑CGCCATGATCTTATGATACCGCGTTTGCCGTGAT‑CTGTAAAATCGTCCGCGCTTTGGCGCGGGCCATAGCGGCTTCAAcggcgggt > 1:148239/1‑149 (MQ=2) ttGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGGGGAT‑CGGCCTGTTGTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGGGCTTTGGCCCGGGCAATAGCTGCTTCGCcggcgggt > 5:120252/1‑149 (MQ=11) tCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCTGATTTGCGAGGAT‑CGCCCTGTTGTTCTGGTTCCGCATTATCC‑TGTTGCTCTTCCAGATTGCTCGCTATGGCGACGTCGATAGCTGCTTCGAGGGAGGATTTgctgg > 4:141923/1‑148 (MQ=11) gggttgtgggcatgggCGCGGGCAATAGCGGCGTCAACTGCGGCTTTGCGCTGAT‑CGACCTGTTCTTCTGGGTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAt < 7:244193/137‑1 (MQ=11) gtttttgTGCATTTGCTCGGTCAATAGCCGCGTCCACGGCAGCTTTGCGCTGAT‑CAACCTGTTCTTCTGGCTCCTCATTATCC‑TGTTGCTGTTCCCGTTTGCGCGCTTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 2:164253/145‑1 (MQ=14) gCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGATTTTCGAGGATcatcc > 8:252459/1‑147 (MQ=11) ttGGCTCGGGCAATAGCTGCTTCGACGGCTGCTTTGCGCTGAT‑CTACCTGTTCTTCTGGTTCCTCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttgt < 8:1142328/150‑1 (MQ=11) tGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGCCCTGTTGTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGAAATAGCGGCTTCTCCGGCGGTTTTTCGAGGATGGACCTGGTGTTc > 8:855931/1‑151 (MQ=11) gCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGCCCTGTTGTGCTGGTTCCTCATTATCC‑TGATGCTGTTCCAGCTTCCCCGCTGTGGCCCGGGCCATAGGCGCATCCACGGCAGCTATGCGCGGaactcccacggttgc > 5:49569/1‑135 (MQ=2) cACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTCCCCGCTTTGGCACCGGCAATAGCTGCTTCTGCGGCAAGTATGCGAGGCTCCACCTGGCGTTCTgg > 5:33363/1‑151 (MQ=11) gcGGGCAATAGCCGCGGCAACTGCCGCTTTGCGCGGAT‑CAACCTGTTCTTCTGGTACCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCTGGGATTGGCACGGGGATTAGCGGCTTGGACGGATGCGTTGCGCGGATGCCCGTGTTGTTGTGGt > 5:1099760/2‑151 (MQ=14) ggCAAGAGCCGCTTCTACTTCTGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGATCCGCCTAAGGC‑GGTGGCTGGTCCAGCTTGCGGCGTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTcc < 1:275004/151‑1 (MQ=11) gCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTGTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGATTTGCGCGGATCGACCTCTTGTTCTGGTTCCg > 5:154206/1‑151 (MQ=255) gCAATAGCGGCGGCGACGGCCGCTTTGCGCGGAT‑CGAGCTGTTCTTCTGGTACCGCATTAGCC‑TGTTGCTGTTCCTGCTTGCGGGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCg < 3:472599/151‑1 (MQ=14) ttttttttataattcggcTTCGAGCGTAT‑TGTACTGTTCTTCTGTCTCTGTTTTAGTA‑TTTTTCGGTTTTAGGTTGTGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCAtt < 2:355730/136‑1 (MQ=2) cgcggcggcgACGGCGGCGGTGGGCGTAT‑CGACCTGATCTTCTGGCTCCGCATTTGCG‑GCTTCCTGAGCGCCCTTGCGAGGTGTGCGACTGCGAACTGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTa < 3:532331/150‑1 (MQ=2) accGGCCTCGACGGCCGCGGTGCGCGCATCCCAGCT‑TTCTTCTGGCTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTa < 5:991373/149‑1 (MQ=11) aGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCGATAGCGGCTTCGACGGCGGGTTTCCGGGGATCGGCATGGGGTTCTGGTTgcgcggt > 5:241283/1‑147 (MQ=14) cGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTGTTCTGGCTCGGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGGGCTTTGGCGCGGGCGATAGCTGCTTCGACGGCAGGTTTACGAGGATCCCCAACGTGTTCTGGTTCGGTAttttg > 3:324462/1‑148 (MQ=11) ggCTTCGACGGCGGCTTTGCGCGGAT‑CGCCCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCTCCGGCAGATTTTCGAGGCTCATCCTGGGGTTCTGCGTCGGGATTAGcc > 8:1167881/1‑151 (MQ=11) ggCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCTATAGCTGCTTCAACGGCGGATTTACGAGGATCAGCCTGGGGTTCTGGTTCGGGAttgggc > 6:194733/1‑147 (MQ=11) cTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGAGGATCTCCCTGTTGTTCTGGTTCCGGAGTATCCTg > 8:409499/1‑151 (MQ=14) cTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGCCGGCTTTGCGAGGATCGACCTCTTGTTCTGGTTCCGAATTATCCTg > 4:1058444/1‑151 (MQ=14) ttCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCGACGGCGGGTTTGCGGGGATCGACCTGTGGTGCTGGGTCCGGATTATGCTGt > 1:773250/1‑151 (MQ=14) ttCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTCCGTGGATCGCCCACGGTTTCTGGTTCCTGATTATGCTGt > 4:101603/1‑151 (MQ=11) ttCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGCCGGCGGCTTTCCGCGGATCGACCTCGTGTTCTGCTTCCGGAGTATCCTGt > 8:663752/1‑151 (MQ=14) ttCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTTTTTCTGCGTCCTCATTATGCTGt > 8:421052/1‑151 (MQ=14) ttCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGt > 3:843399/1‑151 (MQ=40) gACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCGGATTTGCGAGGATCAGCCTCTTGTTCTGCTTCGGGATTATCCTGATgt > 4:650395/1‑150 (MQ=14) gACGGCAGCTTTGCGCGGAT‑CCACCTGTTCTTCTGGCTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTgcgcgc < 1:275005/72‑1 (MQ=11) cggcggCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCTTCGACGGCGGGTTTGCGGGGATCGACCTGTTGTGCTGGTTCGGGATTTTCCTGTTGCTg > 5:854451/1‑151 (MQ=14) cggcggCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCTTCGACGGCCGGTTTGCGCGGATCCCCATCGTGTTCTGGTTCCGTAttttgctgatgttg > 3:730250/1‑139 (MQ=11) cggcggCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTCCGAGGATCGACCAGTTGTTCTGGTTCCTCATTATCCTGTTGATg > 8:905603/1‑151 (MQ=14) gcggcTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGATTTGCGAGGATCGACCTGTTGTTCTGCTTCCGCATTATCCTGTTgatctt > 6:775176/1‑146 (MQ=14) cggcTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCAACGGCGGCTTTGCGCGGATCACCAACGTGTTCTGCGTCCGGAGTAGCCTGAAGCTCTTc > 6:812501/1‑151 (MQ=11) ggcTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGCCCAGGTGTTCTGCTTCCTCATTATCCTGTAGGTGTTcc > 4:360870/1‑151 (MQ=14) ggcTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTcc > 7:66509/1‑151 (MQ=40) gcTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTCGTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTcc > 1:516587/1‑150 (MQ=255) tttGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGTCCTCTTGTTCTGCTTCGGCATTAGCCTGTTGATGTTCCAgg > 1:1017699/1‑150 (MQ=255) gagccgcgGAG‑CCACCTGTTCTTCTGGCTCGGCATTAGCC‑TGTTGCTGTTCCCGGTTGCGCGCTTTCGCGCGTGCAATTGCGGCTTCGCCGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGc < 7:82124/147‑1 (MQ=11) ttGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCAATAGCTGCTTCCACGGCAGGTTTGCGGGGATCGCCATCTTGTTCTGGGTCGGGAGTATCCTGATGTTCTTcc > 2:921699/1‑147 (MQ=11) tGCGCGGAT‑CGACCTGTTGTTCTGGCTCGGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGAGGATCGCCATCGGGTGCTGGGTCGGGATTTTCCTGTTGGTCTTCCAGGtt > 5:896192/1‑151 (MQ=11) gcgcGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTTGACGGCGGCTTTGCGCGGATCGACATGTTGTGCTGGTTCCGCATTAGCCTGTTGATGTTCCAGATTg > 7:743359/1‑151 (MQ=255) cgcgGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGATTTACGCGGATCGACCTGTTGTTCTGGTTCCGCATTATCCTGTTGCTGTTCCAGCTTgc > 8:239951/1‑151 (MQ=255) ggAT‑CTACCTTTTCTCCTGGATCCGCCTTAGCC‑GGTTGCTGTGCGTCGTGCCTGGCTTTCCCACGGGCAATATAGGGTTCTACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTGGGTCCGCATTAGCCTGTTGCTGTTCCAGCTTgc‑gcg < 1:257209/151‑1 (MQ=2) aT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGATTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGATGCTGTTCCAGATTCC‑GCGCt > 3:308093/1‑151 (MQ=255) t‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGGGGTGCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTCC‑GCGAtt > 5:548685/1‑151 (MQ=14) cGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCGGCTTCGACGGCTGCTTTGCGGGGATCGCCCTGTTGTTCTGGTTCCTGATTATCCTGTTGGTGTTCCAGCTTGC‑GCGCttt > 3:528226/1‑151 (MQ=14) cGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGC‑GAGCttt > 3:602005/1‑151 (MQ=255) gACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTTCGAGGATCAGCCTGGTTTGCTGGTTCCGGATTATGCTGTTGGTGTTCCAGGTTgc‑gggtgggt > 2:803524/1‑144 (MQ=14) gACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGGATTAGCCTGTTGCTGTTCCAGGTTGC‑GAGAtttt > 5:732313/1‑150 (MQ=14) gACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGGTGTTCCAGCTTGC‑GCGCTTTg > 1:1187334/1‑151 (MQ=255) aCCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGCCCTGGTGTTCTGGTTCCGGATTATCCTGTTGCTGTTCCAGCTTGC‑GCGCttttg > 8:754928/1‑149 (MQ=14) ccTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCGATAGCTGCTTCGACGGCGGCTTTGCGGGGATCAGCCTCTTTTTCTGGTTCCGAATTATCCTGAAGCTCTTCCAGCTTGCGGCGTTTTgg > 6:341183/1‑151 (MQ=14) tGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGC‑GCGCTTTGgcgc > 7:1098952/1‑151 (MQ=255) tGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGGTGTTCTGGGTCCGGATTTTCCTGTTGGTGTTCCAGCTTCC‑GAGGTTTgtggg > 2:572830/1‑147 (MQ=14) gTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCAGCTTTACGAGGATCGACCACTGTTTCTGCTTCCTAATTTTCCTGATGATCTTCCAGATTcc‑gagattattcgcc > 6:817841/1‑139 (MQ=9) ttcttcTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCTGCTTCGACGGCGGGTTTGCGGGGATCGCCATCTTGTTCTGGTTCCGAATTATGCTGTTGCTGTGACAGCTTCC‑CCGATTTggggggg > 1:894347/1‑146 (MQ=14) ttcttcTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGAGGATCGCCCTGTTGTTCTGGTTCCTCATTATCCTGTTGATGTTCCAGCTTGC‑GCGCTTTGGCGCgg > 3:1211158/1‑151 (MQ=255) tcttctGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGTTCCGCAGTAGCCTGTTGCTGTTCCAGCTTGC‑GCGCTTTGGGGCggg > 1:413839/1‑151 (MQ=255) tcttctGGTACCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGGGCTTTGGCCCGGGCAATAGCg > 1:105118/1‑63 (MQ=11) | TTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGAT‑CGACCTGTTCTTCTGGTTCCGCATTAGCC‑TGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGC‑GCGCTTTGGCGCGGGC > DH1/2169571‑2169870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |