Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,947,4670AC28.1% 180.9 / 86.0 89intergenic (+4/‑30)metZ/metWtRNA‑Met/tRNA‑Met
Reads supporting (aligned to +/- strand):  ref base A (6/58);  new base C (1/24);  total (7/82)
Fisher's exact test for biased strand distribution p-value = 6.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01

Only 100 of 133 total aligned reads displayed.

CCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG  >  NC_000913/2947317‑2947561
                                                                                                                                                       |                                                                                               
ccAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTa                                                                                                 <  5:1028062/151‑1 (MQ=255)
  aaaTCGGGGATCGGGGAAAAACCCCGGGTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTatt                                                                                               <  8:338936/151‑3 (MQ=18)
  aaaTCCGTGATGGTCTTAAACAAAAGGTTGAAGG‑AAAAATCCATTGCAGTATAATCCGCCTACTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCaaa                                                                                               <  2:19335/151‑1 (MQ=11)
  aaaTCCGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTatt                                                                                               >  2:462258/1‑149 (MQ=255)
  aaaTCCGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTaaa                                                                                               <  2:115626/151‑1 (MQ=255)
  aaaTCCGTGATCGGCCTAAAACAAAGGGTGCATG‑AATAATCGAGCGGAGTATAGTCCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCaaa                                                                                               <  1:1155373/151‑1 (MQ=18)
  aaaTCAGTGATCGTGTTATAATTAAGGCTGCATG‑AAATAGAGATCGTAGTATAGTGCGAATCCAGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCaaa                                                                                               <  1:256375/151‑1 (MQ=14)
   aaTCCGTGATCGGGTTAAAAAAAAGCTGGCAGG‑AAAACGCGAGCGGAGAATAGTTCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattg                                                                                              <  8:151427/151‑4 (MQ=18)
   aaTCCGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCTAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattg                                                                                              <  3:1415456/151‑4 (MQ=255)
    atgcgggATCGGGGTAAAACAAAGCGTGCATG‑AAAAACCGAGCGGAGTATACTCCGCCTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattga                                                                                             <  8:589876/145‑5 (MQ=17)
    aTCCGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattt                                                                                              >  5:945615/1‑147 (MQ=255)
    aTCCGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAt                                                                                             <  3:1282862/151‑1 (MQ=255)
      gcGTGATCGTGTTAAAAATAAGGTTGAATG‑AAAAAGCGAGCGTAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaa                                                                                            <  7:980304/149‑6 (MQ=18)
       ggTGAGCGTGGTAAAAACCCGGAGGCAGG‑AAAACGCCTGTGCAGTAGAGTGGGCATCCCGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTtga                                                                                         <  5:883824/150‑1 (MQ=11)
       cGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaac                                                                                           >  8:824785/1‑144 (MQ=255)
       cGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtg                                                                                          <  3:1058818/151‑1 (MQ=255)
       cGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATGAAAATTtg                                                                                          >  8:1126468/1‑151 (MQ=255)
        gTGATGGGGGTATACATATGGTTGCACG‑AAATCTAGAGCGGAGTATTGTTCGCATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTGTTCGGGCTCATAACGCGAAGGTCGTCGGTTCATATCCGGCCCCGGGAACCAA‑TCAAATTtgat                                                                                        <  4:1489221/151‑1 (MQ=9)
        gTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATTatataaaac                                                                                         >  1:327607/1‑143 (MQ=255)
         tGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTa                                                                                                 >  3:1425767/1‑142 (MQ=255)
          gATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtgatg                                                                                       <  6:180250/151‑1 (MQ=255)
          gATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtgatg                                                                                       <  5:331684/151‑1 (MQ=255)
          gATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtgatg                                                                                       <  2:837477/151‑1 (MQ=255)
            tCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaaaaacct                                                                                      >  4:521494/1‑139 (MQ=255)
            gcGGGGTAAAAAAAAGGGTGCATG‑AAAACGCCAGGGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAg                                                                                    <  8:761783/150‑1 (MQ=18)
             gtgggTAAAACAAAGGGTGCAGG‑AAAAAGCTTGAGTTGTATTTTGCGCATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGt                                                                                   <  1:1058059/149‑1 (MQ=11)
             gggggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGGATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAg                                                                                    <  3:490055/150‑1 (MQ=255)
             gggggTAAAAAAAAGGTTGCATG‑AAAAATCGAGCGGAGTATATTTCGCTTCCTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaacaccctaa                                                                                    <  7:177783/150‑14 (MQ=14)
             cgtcctAAAAAAAAGG‑TGCAAGCAAATCGCGATCGGAGTATATTGCGCATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAg                                                                                    <  1:1000388/145‑1 (MQ=14)
             cGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTatagaacacccta                                                                                     >  1:1356837/1‑138 (MQ=255)
             cGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGaa                                                                                     <  8:1073389/150‑1 (MQ=255)
             cGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAg                                                                                    <  2:39560/151‑1 (MQ=255)
             cGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCACGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaacaaccta                                                                                     >  4:731376/1‑138 (MQ=255)
             cGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGGGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGaa                                                                                     <  6:553311/150‑1 (MQ=255)
             cGGGGTAAAAAAAAGGGTGCATG‑AAAAATCGATCGGAGTATACTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAg                                                                                    <  8:1378166/150‑1 (MQ=17)
              ggggTAAAAAAAAGGTTGCATG‑AATACGCGATCGTAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaacaccctaac                                                                                   <  2:1440141/151‑15 (MQ=17)
              ggggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCCATTaataaacaaccaaac                                                                                   >  7:738081/1‑138 (MQ=255)
              ggggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGt                                                                                   <  8:312548/151‑1 (MQ=255)
              ggggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACCGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGCCTCAAAACCCGAACGACGTCGGTTCAAATCCGCCCCCCGCAACCAATTattgaacacccaaa                                                                                    >  3:1132773/1‑137 (MQ=18)
               ggttAAAATAAAGGTTGCATG‑AAAAAGCGAGCGGAGTATAGTGCGCTTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaacaccct                                                                                      <  7:158476/144‑12 (MQ=17)
               gggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaacaacctaacg                                                                                  >  2:708477/1‑136 (MQ=255)
               gggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑a                                                                                 <  4:381208/151‑1 (MQ=255)
               gggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAATTTtaataagtt                                                                                   >  3:682060/1‑145 (MQ=255)
               gggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCCCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTACAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑a                                                                                 <  2:601343/151‑1 (MQ=255)
                ggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑aa                                                                                <  7:434281/151‑1 (MQ=255)
                ggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑a                                                                                 >  2:837769/1‑150 (MQ=255)
                ggTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGAAAACAATTattgaaacacctaac                                                                                   >  4:952532/1‑135 (MQ=21)
                  aaaaaataaGGTTGAATG‑AAAAATCGAGAGTAGTATTCTCGGCATCCTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaag                                                                             <  4:1350571/150‑3 (MQ=11)
                   aaaacaaaGGTTGCATG‑AAAACCCGAGCGGAGTATAGTGCGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaag                                                                             <  6:132269/150‑3 (MQ=17)
                   aaaaataaGGTTGAATG‑AAATATCTTTCGTAGTATTGTGCGCATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaag                                                                             <  4:600088/150‑3 (MQ=11)
                   aaaaaaaaGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGc                                                                             <  2:1245092/151‑1 (MQ=255)
                   aaaaaaaaGGTGGAATG‑AAAAAGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaagc                                                                            <  3:664976/151‑4 (MQ=17)
                   aaaaaaaaCGGTGCATG‑AAAACGCGATCGTAGTATAGTGCGCATCCACGGACGCGGGGGGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaag                                                                             <  8:1276506/150‑3 (MQ=17)
                    aacaaaaGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCa                                                                            <  2:399683/148‑1 (MQ=255)
                    aaataaaGGTTGAATG‑AAAAATCTATCGGAGTATTTTGCGCATCCGCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaagca                                                                           <  2:1357949/151‑5 (MQ=11)
                    aaagaaagGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaacacc                                                                                        <  8:1464663/140‑10 (MQ=255)
                    aaaaaaaGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaacaac                                                                                        >  3:1471760/1‑131 (MQ=255)
                    aaaaaaaGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCa                                                                            <  8:446159/151‑1 (MQ=255)
                    aaaaaaaGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TAAAATTTGATTCAGT‑aaaagc                                                                            >  1:1019227/1‑147 (MQ=255)
                    aaaaaaaGCTTGAAGG‑AAAAAGCTAGTGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaagca                                                                           <  8:1148523/151‑5 (MQ=14)
                     aaacaaGGGTGCATG‑AAAACTCTAGCGGAGTATAGTTCGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaagcag                                                                          <  6:550256/151‑6 (MQ=14)
                     aaaacaGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAg                                                                           <  7:888768/151‑1 (MQ=255)
                     aaaaaaGGTTGAATG‑AAATCTATATTGTAGTATAGTGCGATTCCTGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaagcag                                                                          <  1:354072/151‑6 (MQ=11)
                      aaaaaGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGt                                                                          <  3:1242599/151‑1 (MQ=255)
                        aaaGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTAc                                                                        <  2:266344/151‑1 (MQ=255)
                          aGGGTGCAGG‑AAATCTCGAGGGGTGTATTGTGGGCATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGTAAAAGCAGTACgg                                                                      <  8:679413/151‑1 (MQ=11)
                           ggTTGAATC‑AAAACCCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGTAAAAGCAGTACGGt                                                                     <  3:1132428/151‑1 (MQ=14)
                            gTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTg                                                                    <  4:155978/151‑1 (MQ=255)
                              tGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGa                                                                   <  3:1393329/150‑1 (MQ=255)
                              tGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGa                                                                   <  7:1342760/150‑1 (MQ=255)
                               gCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGAc                                                                  <  7:1467987/150‑1 (MQ=255)
                               gCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGAc                                                                  <  2:531420/150‑1 (MQ=255)
                               gCATG‑AAAAAGCGATGGGTGTATAGTGCGCATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGTAAAAGCAGTACGGTGAc                                                                  <  8:761156/150‑1 (MQ=11)
                                cATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGAcgc                                                                <  3:676748/151‑1 (MQ=255)
                                aaTG‑AAACCGCGCGCGGATTATAGTCCGCACCCCCGGACGCGGGGTGGAGCAGCCTGGTCGCTCGTCGGGCTAATAACCCTATGGTCGTCGGTAAAAATCCGGCCCCCGCAACCAATAAAATTTTGATGAATA‑AAAGCAGTCCGGTGAcgc                                                                <  4:1474417/150‑1 (MQ=14)
                                 aTG‑AAAACGCGATCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattg                                                                                              <  6:753578/121‑4 (MQ=255)
                                 aTG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGAcgcg                                                               <  1:134138/151‑1 (MQ=255)
                                 aTG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCATCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGAcgcg                                                               <  8:1379182/151‑1 (MQ=255)
                                 aTG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTaatg                                                                                              >  7:756420/1‑119 (MQ=255)
                                 aTG‑AAAACGAGAGCGGAGAATATTTCGCTTCCCGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGTAAAAGCAGTACGGTGAcgcg                                                               <  1:488824/151‑1 (MQ=1)
                                   g‑AACACGCTAGGGGTGTCTCGTGCGCAGCCCCGGAGGCGGGGTGGAGCAGCCTGGTAGCTCGGGGGGCTCATAACCCGACGGGCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AACGCAGTACGGGGACGCggg                                                             <  7:943567/151‑1 (MQ=14)
                                   g‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCggg                                                             <  3:1251780/151‑1 (MQ=255)
                                   g‑AAAACGCGAGCGGAGTAAAGGGCGACTCCCCGGCCGCGGGGTGGAGCAGCCTGGGAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGACGT‑AACGCAGCACGGGGACGCggg                                                             <  7:950489/151‑1 (MQ=17)
                                     aatactcgAGCGCTGTATAGTGCGCGTCCTGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCgggg                                                            <  8:1434655/145‑1 (MQ=11)
                                     aaaaCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCgggg                                                            <  5:702054/151‑1 (MQ=255)
                                      atactctatcgttgTATAGTCCGAATCCTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGt                                                           <  4:946392/138‑1 (MQ=11)
                                      aaaCTCGAGCGTAGTATAGAGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGt                                                           <  5:1280088/151‑1 (MQ=11)
                                      aaaCGCGAGCGGAGTTTAGTGCGCATCGACGGACGCGGGGTGGAGCAGGCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTGAAATCCGGCCGCCGCAACGAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGt                                                           <  4:295961/151‑1 (MQ=18)
                                       aaCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTg                                                          <  6:283723/151‑1 (MQ=255)
                                        aCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattgaacaccct                                                                                      >  4:1134733/1‑112 (MQ=255)
                                         cgcgAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCCGGCTGGTAGCGCGTCGGGCTCAGACCCCGAAGGTCGTCGGGTCTAATCCGGCCCCCGCACCCAATAAAAATTTGAGCAGGT‑TAAGCCGGCCGGTGCCGGGGGGTggg                                                        >  6:1086021/1‑150 (MQ=255)
                                         cgcgAGCGGAGTATAGTGCGCATCCACGGACGCGGGGGGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGGTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTGGa                                                        <  8:659250/151‑1 (MQ=255)
                                          gcgAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTGGag                                                       <  7:1464697/151‑1 (MQ=255)
                                           cgAGCGGAGTATAGTGAGCATCCACGGACGCGGGGTGGAGCAGCGTGGTAGCTCGTCGGGATCATAACCCGAAGGTCGTCGGTTCAAATCAGGCCCCGGCAACCAATTAAATTTTGATGAAGT‑AACGCAGTACGGTGACGCGGGGTGGagc                                                      <  3:43029/151‑1 (MQ=17)
                                                ggAGTAGAGTGCGCTTCCTCTGACTAGGGGTGGAGCAGTGTGGTAGGTCGTCTGTATATTAAGCCGAAGGTGGTCTGTTGAAATACGGCCCCCGGAACCAATAAAAATTTGATGAAGT‑AAAGGATTACGGTGACGCGGGGTGGAGCAGCCt                                                 <  4:9863/151‑1 (MQ=9)
                                                           cgcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGTCTCATAACCCGTAGGTCGTCGGTTCAAATCCGTCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCtcgtc                                      <  4:838330/151‑1 (MQ=255)
                                                            ccATCCACGGACTCTGTGTGGAGTAGCGTGTTATCTCGTCTGTATCTTAAGCCGAATGGCGGCTGTTCTAATCAGTCCCGGGGAAGCAATTAAAATTTGCTGTAGT‑ATCGGATTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCtcgtcg                                     <  5:445863/150‑1 (MQ=9)
                                                              aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTattga                                                                                             <  5:1312030/94‑5 (MQ=17)
                                                              aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTa                                                                                                 >  3:912932/1‑90 (MQ=38)
                                                                                                cgtcgGTATCTTAAGCCTAAGGGGGTCGGTTGAAATCAGCCCGGCGCAAGCAATTAAACTTTGATGAAGT‑CACGGACTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCgg  <  2:6500/150‑1 (MQ=11)
                                                                                                                                                       |                                                                                               
CCAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATG‑AAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGG  >  NC_000913/2947317‑2947561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑