BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,947,481	1	.	A	24.1%	189.4 / 94.8	79	intergenic (+18/‑16)	metZ/metW	tRNA‑Met/tRNA‑Met
Reads supporting (aligned to +/- strand): ref base . (4/56); new base A (1/18); total (5/74)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.03e-01

Only 100 of 105 total aligned reads displayed.

GGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGG  >  NC_000913/2947331‑2947613

gggtTAAAAAAAAGGTTGCATGAAATATCTAGCGTAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑a                                                                                                                                     <  2:190021/151‑1 (MQ=17)

ggggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑Gt                                                                                                                                       <  5:127385/151‑1 (MQ=255)

 gggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGGATCCACGGACGCGGGGTGGAGCAGCCTGGGAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑a                                                                                                                                     <  1:482728/151‑1 (MQ=255)

 gggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑a                                                                                                                                     <  1:1228472/151‑1 (MQ=255)

  gttAAAAACAAGGTTGCATGAAAACCCGAGCGTAGTATATTTGGCTTCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaa                                                                                                                                   <  5:682558/149‑1 (MQ=14)

  ggTAAAAAAATGGTTGCATGAAAAGGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGGCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AT‑GT‑aa                                                                                                                                    <  6:1024218/151‑1 (MQ=255)

  ggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑aa                                                                                                                                    <  4:1548986/151‑1 (MQ=255)

  ggTAAAAAAAAGGGTGCATGAAAACGCGAGCGGAGTATACTGCGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaa                                                                                                                                   <  4:1202707/151‑1 (MQ=18)

   gTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑aaa                                                                                                                                   <  8:1131306/151‑1 (MQ=255)

   gTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑aaa                                                                                                                                   <  6:127764/151‑1 (MQ=255)

   gTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑aaa                                                                                                                                   <  7:731604/151‑1 (MQ=255)

   gTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑aaa                                                                                                                                   <  4:1345237/151‑1 (MQ=255)

   gTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑aaa                                                                                                                                   <  4:898669/151‑1 (MQ=255)

   gTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑aaa                                                                                                                                   <  4:707130/151‑1 (MQ=255)

    tAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGGGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑aaa                                                                                                                                   <  6:503709/150‑1 (MQ=255)

     aaaataaaGGGTGAATGAAAACGCTAGCGGAGTATAGTCCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaag                                                                                                                                 <  7:1577500/150‑3 (MQ=17)

     aaaacaaaGGTTGCATGAAAACTCTAGCGGAGTATAGTGGGCATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaag                                                                                                                                 <  5:1515381/150‑3 (MQ=17)

     aaaaatcaggcgccATGAAAAAGCGAGCGGAGAATAGTGCGCATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaag                                                                                                                                 <  4:131417/137‑3 (MQ=14)

     aaaaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAg                                                                                                                                  <  7:241126/150‑1 (MQ=255)

     aaaaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAg                                                                                                                                  <  1:1851377/150‑1 (MQ=255)

     aaaaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGc                                                                                                                                 <  1:820042/151‑1 (MQ=255)

     aaaaaaaaGGTTGCATGAAAACCCGAGCAGAGTATAGTCCGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaagc                                                                                                                                <  6:1679522/151‑4 (MQ=17)

      atatccaGGTGGCATGAATAAGAGTTCGGAGTATAGTTGGCTTCCTGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaagca                                                                                                                               <  3:957780/145‑5 (MQ=11)

      aaaccacgggggCAGGAAAACCCGAGCGCAGTATAGTGCGCATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaagca                                                                                                                               <  6:1006755/140‑5 (MQ=14)

      aaaataaGGTTGCATGAAAAATCGATCGTTGTATTTTTCGCTTCCTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaagca                                                                                                                               <  8:1188797/151‑5 (MQ=11)

      aaaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCa                                                                                                                                <  4:1453647/151‑1 (MQ=255)

      aaaaaaaGCGTGCATGAAAAAGCGAGCGCAGTATAGTGCCCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaagca                                                                                                                               <  6:468671/151‑5 (MQ=14)

       aatcaaGGTTGCATGAAAACGATAGTGTAGTATAGTGGGAATCCTCTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaagcag                                                                                                                              <  6:1139321/147‑6 (MQ=11)

       aaataaGGTTGAATGAAAACCATAGCGTAGTATAGTCGGAATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GT‑aaaagcag                                                                                                                              <  5:1207617/151‑6 (MQ=11)

       aaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCATCCTGGTAGCTCGTCGGGCTCATAACCAGAAGGTCGTCGGTTCAAATACGGACCCCGCAACCAATTAAAATTTAATG‑AA‑GT‑AAAGc                                                                                                                                 >  5:1839480/1‑149 (MQ=255)

       aaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAg                                                                                                                               <  2:1607006/151‑1 (MQ=255)

       aaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGCTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCAGGCCCCCGCCACCAATTAAAATTTGAGG‑AT‑GT‑AAAGc                                                                                                                                 >  7:217172/1‑149 (MQ=255)

        acacaGGGTGCACCAAAAAGCCAGCGGAGTATAGAGCGCCTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGt                                                                                                                              <  6:30670/147‑1 (MQ=11)

        aaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGt                                                                                                                              <  3:1518160/151‑1 (MQ=255)

         aaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGAGGCGTGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTa                                                                                                                             <  5:368807/151‑1 (MQ=255)

         aaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTa                                                                                                                             <  6:681101/151‑1 (MQ=255)

         aaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTa                                                                                                                             <  3:1427519/151‑1 (MQ=255)

         aaaaGGTTGAATGAAAAATAGATAGTAGTATAGTTCGCTTACACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTa                                                                                                                             <  3:761016/151‑1 (MQ=11)

          aaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTAc                                                                                                                            <  5:778386/151‑1 (MQ=255)

          aaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTAc                                                                                                                            <  8:1788713/151‑1 (MQ=255)

          aaaGGTGGAATGAAATAGAGTGCGTAGTATAGTGCGCCTCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTAc                                                                                                                            <  6:1482447/151‑1 (MQ=11)

          aaaGGGTGCAGGAAAAAGCGAGCGCAGTATAGTCCGCCTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTAc                                                                                                                            <  4:255631/151‑1 (MQ=14)

           cggggtgaaTGAAAAACCGAGCGCAGTATAGTCGGAATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACg                                                                                                                           <  7:364046/143‑1 (MQ=1)

           aaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACg                                                                                                                           <  5:207244/151‑1 (MQ=255)

           aaGGTTGCATGAAAAAGCGATGGGAGTATACTCCGCATCCTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACg                                                                                                                           <  5:1517456/151‑1 (MQ=11)

           aaGGTTCAATGAAAAATCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACg                                                                                                                           <  4:1388904/151‑1 (MQ=14)

            cggctcaacgAAAAAGCGATCGGAGTATAGACGGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACgg                                                                                                                          <  3:1205303/142‑1 (MQ=11)

            aGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACgg                                                                                                                          <  8:928552/151‑1 (MQ=255)

            aGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACgg                                                                                                                          <  6:965866/151‑1 (MQ=255)

             ggTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGt                                                                                                                         <  1:176679/151‑1 (MQ=255)

             ggTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATT‑AATTT‑AAAGCAGTACg                                                                                                                           >  8:363512/1‑149 (MQ=17)

             ggTTGAATGAAATCTCTAGCGGTGTATATTGCGAATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACGGt                                                                                                                         <  5:519891/151‑1 (MQ=11)

              ggtGCAGGAATACGCGTGCGGAGTATAGTCCGCCTCCTGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACGGTg                                                                                                                        <  1:951649/149‑1 (MQ=11)

              gTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTg                                                                                                                        <  2:1537888/151‑1 (MQ=255)

              gTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTg                                                                                                                        <  8:931369/151‑1 (MQ=255)

              gTTGCAGGAAAACTCGAGGGCTGTATAGAGCGCCTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACGGTg                                                                                                                        <  3:665781/151‑1 (MQ=11)

                tGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGa                                                                                                                       <  7:1198469/150‑1 (MQ=255)

                 gCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGAcg                                                                                                                     <  7:307241/151‑1 (MQ=255)

                 caaggAAAAAGCCATCGGAGAATAGAGCCCATACACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACGGTGAcg                                                                                                                     <  5:1681917/147‑1 (MQ=11)

                  cATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGAcgc                                                                                                                    <  3:822277/151‑1 (MQ=255)

                   atgaaatacagagaGGAGTATAGACCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACGGTGAcgcg                                                                                                                   <  6:1175522/141‑1 (MQ=11)

                   aTGAAAACGCGAGCGGAGTATAGTGCGCATGCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGAcgcg                                                                                                                   <  1:1238117/151‑1 (MQ=255)

                   aTGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGAcgcg                                                                                                                   <  5:370604/151‑1 (MQ=255)

                   aTGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGAcgcg                                                                                                                   <  3:273572/151‑1 (MQ=255)

                   aTGAAAACGAGATCGTAGTATATTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACGGTGAcgcg                                                                                                                   <  7:1609489/151‑1 (MQ=11)

                     gNAAACGCGAGNGGAGTATANTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCggg                                                                                                                 <  2:1278744/151‑1 (MQ=255)

                     gAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCggg                                                                                                                 <  1:1821194/151‑1 (MQ=255)

                     gAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCggg                                                                                                                 <  4:568458/151‑1 (MQ=255)

                     gAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCgg                                                                                                                  <  6:566816/150‑1 (MQ=255)

                     gAAAAAGCTAGCGGTGTATAGTGCGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACGGTGACGCggg                                                                                                                 <  1:119329/151‑1 (MQ=11)

                      aaaaCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCggg                                                                                                                 <  5:1773100/150‑1 (MQ=255)

                       aaactatagggtaGTATTGTGCGAATCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTACGGTGACGCGGGGt                                                                                                               <  4:978051/139‑1 (MQ=11)

                       aaaCGGGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCTGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGt                                                                                                               <  4:547266/151‑1 (MQ=255)

                       aaaCGCGAGCGGAGTATAGTGTGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGt                                                                                                               <  8:316427/151‑1 (MQ=255)

                       aaaCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGt                                                                                                               <  7:375662/151‑1 (MQ=255)

                        aaCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATGAAATTTTAATA‑AT‑TT‑AAAGCAGTACgaggtcgggagctg                                                                                                              >  3:626130/1‑138 (MQ=17)

                         aCGCGAGCGGAGTATAGAGCGCATCCACTGACGCGGTGTGGAGGAGCCTGGTAGCTCGTCGGGCTCATATCCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAAGCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGTgg                                                                                                             <  6:1573104/151‑1 (MQ=18)

                          cgcgAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGTGGa                                                                                                            <  4:332946/151‑1 (MQ=255)

                          cgcgAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGTGGa                                                                                                            <  5:1726649/151‑1 (MQ=255)

                          cccgAGCGGAGTATAGTGCGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCTGTTCAAATCCGGCCCCCGCAACCAA‑TAAAATTTGTTGTAA‑TA‑AAAGCAGTACGGTGACGCGGGGTGGa                                                                                                            <  6:1840231/149‑1 (MQ=14)

                             gAGCGGAGTATAGTGCTCATTCACTGACGAGTGTTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGTGGagca                                                                                                         <  3:92182/151‑1 (MQ=17)

                             gAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGTGGagca                                                                                                         <  4:497893/151‑1 (MQ=255)

                              aggggAGTATAGTGAGCATCCACGGACGCGCGTTGGAGCAGGCTTGTAGCTCGTCGGTCTCATAACCCGAAGGTCTGAGGTTCAAATCCGGCCCCCGCAACCAAATAAAAATTGATG‑AA‑GT‑AAAGCAGTACTGTGACGCGGGGTGGagcag                                                                                                        <  3:652103/148‑1 (MQ=17)

                               gCGGAGTATACTCAGCTTCTACGGACTCCGGTTGGAGCAGCCTTTTATCTTGTCTGTCTCATATGCCGAAGGGCGTCGGTTCATATAATACCCGCGGAACCAAATAAATTTTGTTG‑AA‑GT‑TAAGCATTACGGTGACGCGGGGTGGagcagc                                                                                                       <  2:1537261/151‑1 (MQ=9)

                                ggtaGTATAGTGCTCATCCACGGACGCGGGGTGGAGCAGCCTGTTAGCTCGTCGGTCTCATAACCCGAAGGTGGTCGGTTCTAATCCTTCCCCGGCAACGAATTAAAATTTGATG‑AA‑GT‑AAAGGAGTACGGTGACGCGGGGTGGAGCAGcc                                                                                                      <  8:708412/148‑1 (MQ=17)

                                  gAGTTTAGTCCCAATCCACGGACTCGGGGTGGAGAAGCGTGGTTGGTGGTCGGTCTAATAACCCTAAGGGCGTCGGTTCAAAACCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑TT‑AAACCAGTACGGTGACGCGGGGTGGAGCAGCCTg                                                                                                    <  1:577382/151‑1 (MQ=14)

                                  gAGTATAGAGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTg                                                                                                    <  8:1382289/151‑1 (MQ=255)

                                     tataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTAAT‑‑AA‑GTAAAAGCAGTAc                                                                                                                            >  5:1474654/1‑124 (MQ=14)

                                     tataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATG‑AA‑GTAAAAGCAGTAc                                                                                                                            <  6:1475116/124‑1 (MQ=11)

                                     gataGTCCGCATCCACGGACGCGGGGGGGAGCAGCCTGTTAGCTCGGCGGGCTCATAACCCGAAGGTCGGCGGGTCAAATCACCCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AACGCAGTACGGGGACGCGGGGTGGAGCAGCCTGGTa                                                                                                 <  1:332530/150‑1 (MQ=17)

                                      ataGTGCGCATGGACTGACGCGGTGTGGAGCAGCGTGGTTGCTGGGGGGGATCATAACCCGAAGGTCGTCGGTTCAAATCCCGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑CATGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAg                                                                                                <  6:301771/151‑1 (MQ=14)

                                      ataGTGAGCATCCACCGACGCGGGGGGGATCAGCCTGGTAGCTCGTCGGGATCAAAACCCGAAGGGCGGCGGTGCAAAAACTCCCCCCGCAACCAATTAAAAATTGATG‑AA‑GT‑AACCCAGTCCGCTGACGCGGGGTGGAGCAGCCTGGTAg                                                                                                <  6:853034/151‑1 (MQ=17)

                                                 gcacgcaacacgtgTGGAGCAGCCTGGTCGCTCGGCTCTATAACAACCCGAATGTCTGCTCGTCAAATCCCCCCCCCGCAAGCAAAAAAAAATCGCAG‑AA‑GA‑CACGCCCTACGCTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCt                                                                                     <  4:1302709/138‑1 (MQ=2)

                                                        accgGTGTGGAGTAGGGTGGTTGGTCGGCGGGATAACAACCCGAAGGGCGGCTGTGGAAATCAGCCCCCCTGAACCAATAAAATATTGCAG‑TA‑GT‑CACCCAGTACGGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAAcc                                                                              <  7:675114/149‑1 (MQ=2)

                                                            gggTGGAGCAGGCTTGTAGCTCGGCTGTCTCATAACGCGAAGGTCGTCGGTTCAAATCCGGCCGCCGGAACCAATTAAAATTTGATG‑AA‑GT‑AATGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGaa                                                                          <  5:612695/151‑1 (MQ=14)

                                                              ttGGAGCAGCCTGTTAGCTCTTCGGTCTCATAACCCTAAGGTCGTCGGGTCAAATCCCCACCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGGCGTACCCTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAg                                                                         <  1:554907/149‑1 (MQ=11)

                                                                    aagcCTGGTATCTCTGCGGGATCATAACCCTAAGGTCGGCGGTTCAAATCCGCCCGCCGGAACCAATAAAATATTGCTG‑AA‑TT‑CTCCGACTACTGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGtcgtcg                                                                  <  7:894870/150‑1 (MQ=2)

                                                                                 agtctctcTCATAAGCCGAATGGCGTCTCTGCAAATAAGTCCGCCTCAACGAATAAAACTTTGAAG‑AA‑TT‑AACGCACTCCTGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATcc                                                        <  6:284907/141‑1 (MQ=2)

                                                                                                                          ccgcggaaCCAATTACATTTTGTTG‑AA‑TT‑CTCGGATTCCTGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACgg            <  5:607190/145‑1 (MQ=14)

                                                                                                                                    aaTTAAAATTTGTTG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATTACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCGGTACGGTGACGCgggg  <  7:1378446/151‑1 (MQ=255)

GGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATG‑AA‑GT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGG  >  NC_000913/2947331‑2947613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`