Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,392,4570GT25.3% 293.7 / 16.9 210intergenic (+22/‑15)glyV/glyXtRNA‑Gly/tRNA‑Gly
Reads supporting (aligned to +/- strand):  ref base G (46/87);  new base T (7/38);  total (55/155)
Fisher's exact test for biased strand distribution p-value = 2.27e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 213 total aligned reads displayed.

CCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTA  >  NC_000913/4392309‑4392603
                                                                                                                                                    |                                                                                                                                                   
cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg                                                                                                                                                     <  7:1091420/149‑1 (MQ=255)
cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑c                                                                                                                                                   <  7:1542484/150‑1 (MQ=255)
cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGGAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑c                                                                                                                                                   <  8:127829/150‑1 (MQ=255)
 ccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑cac                                                                                                                                                 <  4:886934/151‑1 (MQ=255)
 ccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑cac                                                                                                                                                 <  3:1222784/151‑1 (MQ=255)
  cGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑caca                                                                                                                                                <  8:747881/151‑1 (MQ=255)
  cGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑caca                                                                                                                                                <  5:1312487/151‑1 (MQ=255)
     aaCGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGAGACCGGCTCCAAAAATTGAAAAATGCGGCAATG‑CAAAGac                                                                                                                                             >  8:150157/1‑151 (MQ=21)
         acgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGaccacc                                                                                                                                         <  8:972296/151‑1 (MQ=255)
          cgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCAccc                                                                                                                                        <  4:436844/151‑1 (MQ=255)
             aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAg                                                                                                                                     <  1:71378/151‑1 (MQ=255)
              gAAATGCGAAAATTACGAGAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGc                                                                                                                                    <  7:785683/151‑1 (MQ=255)
                aaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCgg                                                                                                                                  <  8:483523/151‑1 (MQ=255)
                 aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCggg                                                                                                                                 <  7:445615/151‑1 (MQ=255)
                   gCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGa                                                                                                                                <  6:1253418/150‑1 (MQ=255)
                    cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAAt                                                                                                                              <  4:1442934/151‑1 (MQ=255)
                     gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATa                                                                                                                             <  8:784032/151‑1 (MQ=255)
                     gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATa                                                                                                                             <  5:522228/151‑1 (MQ=255)
                         aTTACGAAAGCTAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTc                                                                                                                         <  2:1284135/151‑1 (MQ=255)
                           tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCa                                                                                                                        <  1:929019/150‑1 (MQ=255)
                            aCGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAg                                                                                                                       <  8:262740/150‑1 (MQ=255)
                                   cAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTACCCCTACAAAATTTGAAAATTACTAGATAG‑GAAAAACCACCAATGGGGGAAAAGGATAGTTGGttg                                                                                                                >  4:576819/1‑148 (MQ=14)
                                     aaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGGCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGc                                                                                                             <  4:30147/151‑1 (MQ=255)
                                      aaTTATGTTGTACGATGGAATATCTCAGTTGGTAGAGCTGGTCCTTTCCAAGTTCGGTGTCGCGTGTTGGAGTCTCGTTTCCGTCTCCAAAATTTGAAAATTGCTGCAAAC‑CACAGAAGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCa                                                                                                            <  2:1443226/151‑1 (MQ=14)
                                      aaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTTAAAAGAGGTAAAAAT‑CCCCACCCACCCGAGGGGGTATTGCTCGGTTTGTatctc                                                                                                             >  6:1287449/1‑146 (MQ=14)
                                      aaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTGGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCa                                                                                                            <  3:675543/151‑1 (MQ=255)
                                       aTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCAc                                                                                                           <  5:1543338/151‑1 (MQ=255)
                                          aaGTACTACGCTGGAATAGCTCACTTGGTAGAGCTGGACCTTCCCAATTGAGTGGTCGCGACTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTCCTTCAAAG‑CACATAACAACCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAc                                                                                                        <  3:24105/151‑1 (MQ=14)
                                           agtagtACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTCATGCAAAG‑CACACCCCACCCAACCGGGAATAGCTCGGATGGGAGAGcgcaagg                                                                                                       >  1:27098/1‑145 (MQ=14)
                                            gtagtaCTCTGGAATACATCAGTTTTTTGCGCTCGTCCTTGCCTATGGCGTGGTCGGTAGTTCGAGTCTCGGTTCCCGCTCAAAAATTTGAAAATTTCTTCAAAT‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCt                                                                                                      <  1:826080/151‑1 (MQ=9)
                                                 aagcgGGAATATCTCAGTTTGTAGCGGACGAGCTTGCCAATGGCGTGGTCGCTAGTTCGAGTCTCGTTTCCCTCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGcc                                                                                                  <  1:428731/148‑1 (MQ=11)
                                                 aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGATCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCa                                                                                                 <  7:1577772/151‑1 (MQ=255)
                                                  agcttgAATAGCTCATATCGTATAGCACGACCTTCCCAAGGTCGGGGTCGCGATATCGAGGCTCGTTTCCCGCTCAAAAATTTGAAAAGTGCTTAAAAC‑CAAAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCaa                                                                                                <  4:1385265/146‑1 (MQ=11)
                                                   gcgGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTTCAAAG‑CACCCACCACCCAAGCGGCAAAAGCACCGTTGGTAGAGCACGACCTTGCCa                                                                                                 >  8:529922/1‑149 (MQ=14)
                                                     tggAATAGCTATGTTTGTAGTGCAGGAGCTTGGCTAGGTCTGGGTCGCTAGTTCGTGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTTCTGAAAAG‑CACTGACGACCGAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg                                                                                              <  2:757889/149‑1 (MQ=11)
                                                     gggCATATCTCAGTTTGTTGAGCTCGACCTTGGCAATGGAGGGGTCGCGATTTCGAGTCTCGTTTCCCCCTCCAAAATTTGAAAAGTGCTTCAAAT‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGt                                                                                             <  3:889486/151‑1 (MQ=14)
                                                     gggAATATCTCAGTTTGTTGAGCAGGAGCTTCCCTAGTGCGTGGTCGCTATTTGGTGTCTCGTTTCCGTCTCCTAAATTTGAAAAGTGCTTCAAAT‑CACATACCTCGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGt                                                                                             <  2:1380305/151‑1 (MQ=9)
                                                       gAATAGCTCAGTTTTTAGAGCACGACCTTTCGAAGTTCGGGGTCGGTAGATCGAGTCTCGTTTCCGGCTCAAAAATTTGAAAAGTTCTTAAAAT‑AACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTc                                                                                            <  2:11943/150‑1 (MQ=11)
                                                       gAATAGCTCAGTTGTTAGAGCTCGAGGTTGCGTATGGCTGGGTCGCGTGTTCGAGTCTCGGTTCCGGCTCCAAAATTTGAAAAGTTCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg                                                                                           <  4:1547297/151‑1 (MQ=14)
                                                       gAATAGCTCAGTTGGTAGAGCAGGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg                                                                                           <  7:657711/151‑1 (MQ=255)
                                                         aTAGCTCAGTGGCTAGAGCACGACCTTGCCTACGTCGGGGTCGCGAGTTCGAGGCTCGGTTCCCGCTCCAAAATTTGAAAATTCCTTCAAAG‑CACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg                                                                                         <  5:207228/151‑1 (MQ=14)
                                                             cTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGCGTTGGCGTCTCGTTTGCCGCGCCAAAATTTTAAAATTTCTGCAAAT‑AACAGCCCACCCAACCCGGGATAGCTCACGTGGGTTAGCCCCACCTGGGCAAGGGGGGGGtgg                                                                                     >  7:87570/1‑149 (MQ=9)
                                                              tCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTATCAGAGTATAAAAG‑CCCCCCCCACCCCAGGGGGAATTGCTCGTTTGTTAGGTCACGGCGTTCCGAAGGTccgcctgcg                                                                                    >  8:231824/1‑143 (MQ=0)
                                                                aGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAAAGTAATAAAAAT‑CAAAAACCACCCCAGGCGGAATAGATCCGAAGGGAGACCACTAACGTGCCAATGTAggggaagagg                                                                                  >  4:1405020/1‑145 (MQ=2)
                                                                 gtgggTAGAGCACGACCTTGCCAAGGCCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAC‑CACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAg                                                                                 <  7:1410746/148‑1 (MQ=255)
                                                                     gtagcgctggagcTTGCCAAGCTCTGTGTCGCGAGATCGACGCCCGGTTCCCGCTCAAAAATTTGAAAAGTGCTCCAAAT‑AACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTc                                                                              <  7:1434949/138‑1 (MQ=14)
                                                                      tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTGCAAAGATTGAAAAGAGGGGGAACG‑CCACGCCCAACAGCGCGGGGATGGGTCAGTTGGTTGCGACCGACCTAGCCAAGGTCggggggggggggtggg                                                                            >  5:1511412/1‑139 (MQ=2)
                                                                       agcgCACGACGTTCGCAAGGTCGGGGTCGCGAGTTCGAGTGTCGTTTCCCGCTCCATAATTTGAAAAGTGCTGCATCC‑CACAGACGTCCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGa                                                                            <  4:1052790/147‑1 (MQ=11)
                                                                       agagCACGACCTTGGCAAGGGCGTGGTCGCTAGTTCGCGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCACCC‑CACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGa                                                                            <  5:926478/150‑1 (MQ=11)
                                                                           cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                                       <  6:1180684/151‑1 (MQ=38)
                                                                            aCGACCTTGCCAAGGTCGGGGTCGCGAGATCGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAC‑CACAGACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg                                                                      <  5:116697/151‑1 (MQ=255)
                                                                             ggagcTTGCGCAGGGCGGGGTCGCTACTTCGAGTGTCGTTTACCTCTCAAAAATTTGAAAAGTTCGTAATAT‑AACAGACGACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg                                                                      <  1:761973/146‑1 (MQ=2)
                                                                             ggACCTTGCCAAGGTCGGGGTCGCTATTTCGTGTGTCGTTTCCCTCTCCAAAATTTGAAAAGTGCGCCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGt                                                                     <  2:1110944/150‑1 (MQ=14)
                                                                              gagcTTGCCAAGGTCTGGGTCGCGATTTCGAGTCTCGTTTCCCTCTCCTAAATTTGAAAAGTTCTGCAAAT‑CACATACCTACCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt                                                                    <  2:1339360/148‑1 (MQ=14)
                                                                                ccTTGCCAACGTCGGGGTCGCGAGTTCGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTCCATAG‑CACTGACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTc                                                                  <  5:813821/151‑1 (MQ=14)
                                                                                   tGCCAAGGGCGGTGTCGAGATATCGAGCCTCGTTTACCGCTCATAAATTTGAAAAGTCCTCCACAT‑AACATACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTccc                                                                <  2:551218/150‑1 (MQ=14)
                                                                                    ccccaGGGCGTGGTCGCGAGTTCGAGGCTCGTTACCCGCTCAAAAATTTGAAAAGTGCTCCACAT‑AACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCg                                                               <  6:1518728/146‑1 (MQ=14)
                                                                                     gcAAGGTCGTGGTCGAGAGATCCCGCCGCGGTTACCGCTCACAAATTTGAAAATTGCTCCAACC‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCt                                                             <  8:124239/150‑1 (MQ=11)
                                                                                     gcAAGGTCGGGGTCGGGAGTTCGTGTCTCGTTTCCCTCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCt                                                             <  4:1416392/150‑1 (MQ=255)
                                                                                     ccAAGGTCGGGCTCGCGAGTTCGAGGCTCGTTTCCCGCTCAAAAATTTGAAAAGTGCTCCAAAT‑CACAGACCAACCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCt                                                             <  1:1345005/151‑1 (MQ=14)
                                                                                        aGGTCGTGGTCGCTAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTCCTGCAAAT‑AACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCa                                                          <  4:1222033/151‑1 (MQ=255)
                                                                                             ggggTCGCGACTTCGACTCGCCGTTCCCGCTCAAAAATTTGAAAAGTGCGAAAAAC‑CACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAtt                                                     <  5:391613/151‑1 (MQ=14)
                                                                                                   gcgAGTTCGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAg                                               <  4:71903/151‑1 (MQ=255)
                                                                                                   gcgACTTCGAGGCTCGGTTCCCCCTCCAAAATTTGAAAAGTGCTGCAAAT‑CACATACCACCGACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAg                                               <  8:1396879/151‑1 (MQ=14)
                                                                                                   gcgACTTCGAGGCGCGGTTCCCGCTCCTAAATTTGAAAAGTGCTCAAAAC‑CACAGACGTCGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAg                                               <  5:616902/151‑1 (MQ=14)
                                                                                                    cgAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGAGATTCAAAG‑CCCAGGCCACGCCAGCGGGTATTGCTCGGTTGGTATGGCACGACCATGCGCAGGTCGGGTGCGGGAGGGAGAGGCTCGTGGGCGGCTCCAAATTTTaaacg                                               >  8:1152968/1‑148 (MQ=2)
                                                                                                     tatatCGAGGCTCGGTTACGTCTCATAAATTTGAAAAGTTCGTCACAT‑AACAGACGTCCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGt                                              <  1:244563/146‑1 (MQ=14)
                                                                                                     gagaTCGAGGCTCGGTTCCCGCTCCAAAATTAGAAAAGTCCTCCAAAG‑CAAAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTg                                             <  7:1218398/151‑1 (MQ=14)
                                                                                                      aGTTCGACTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCCGCAAAC‑CACAGACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTg                                             <  1:1543704/150‑1 (MQ=255)
                                                                                                          cgcctctcGGTTCCCGCTCAAAAATTTGAAAAGTCCTCCAAAT‑CACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGt                                         <  3:512655/146‑1 (MQ=17)
                                                                                                           caccccccgtaacctcTCAAAAATTAGAAAATTCCGCCAAAC‑AACATAACAACCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTaa                                       <  8:1535802/136‑1 (MQ=11)
                                                                                                            cgTCTCGTTTCCCGCTCAAAAATTTGAAAAGTGCGTCAAAG‑CACATACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAg                                      <  7:936324/150‑1 (MQ=255)
                                                                                                            cgTCTCGGTTCCCGCTCCAAAATTTGAAAAGTGCTTCAAAT‑CACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAg                                      <  3:401198/150‑1 (MQ=255)
                                                                                                               ctcGGTTCCCGCTCCAAAATTTGAAAAGTCCGGAAAAT‑AACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAgg                                     <  6:513457/149‑1 (MQ=17)
                                                                                                                gcGTTTCCCCCGCAAAAATTTGAAAAGTGCTTCAAAT‑AACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGcac                                  <  6:388120/150‑1 (MQ=17)
                                                                                                                 cctttCCCGCTCAAAAATTAGAAAAGTCCTCAACAC‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGcaca                                 <  7:473408/149‑1 (MQ=17)
                                                                                                                 cGTTTCCCGCTCCAAAATTTGAAAATTGCGCCAAAC‑AAAAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGcaca                                 <  6:1025805/151‑1 (MQ=18)
                                                                                                                 cGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGCCCACCCAAGCGGGAATAGCTCCGTTGGGAGCGCACGACCTTGCCCAGGTCGGGGTCGCGAGGTCGAGTCTCGTTTCCAGCTCCAAAATTTTAACGTCCttacaggcccc                                 >  8:765381/1‑141 (MQ=14)
                                                                                                                   tttCCCGCTCCAAAATTTTAAAACAGATAAAAAGCCACA‑ACCACCCAAGCGGGAATAGCTCATTTGTTAGCTCACTCCCTAGCAAAGGTAGCGCGCGCGAGATCGCGTCGCGTTGCCAAATCCAAAAGGTGAAAGTgatcaaatcgcacc                                >  3:1178458/1‑137 (MQ=255)
                                                                                                                    ttacgtgtcataaaTTTGATAAGTTCTGCATTA‑AACTGACCTCCTACTGGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTGGTTTCGCGCTGCAAAATTTGAAAGTGCTGTATGGCACAGa                               <  1:1495798/139‑1 (MQ=9)
                                                                                                                     gcccccgccAAAATTTGAAAACAGCGCCAAAC‑CACATACCACCCAAGCCCGAATAGAGGAGTTGGCAGAGCTGGACCCTGCCCAGCTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGacc                             <  6:810476/144‑1 (MQ=12)
                                                                                                                      ccgtctcataaaTTTGAAAATTCCTCCATAC‑CAAAGACGACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGacca                            <  2:954602/142‑1 (MQ=14)
                                                                                                                      ccccCTCCAAAATTTGAAAAGTGCTTCAAAT‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGacca                            <  4:638530/151‑1 (MQ=255)
                                                                                                                      cccGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGacca                            <  6:160028/151‑1 (MQ=255)
                                                                                                                      acctcTCAAAAATTTGAAAAGTGCTTAAAAT‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGacc                             <  2:604115/146‑1 (MQ=18)
                                                                                                                       ccGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAATACCTCTAATTCACAcaccac                           >  6:608854/1‑151 (MQ=14)
                                                                                                                       ccGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGaccac                           <  4:812190/151‑1 (MQ=255)
                                                                                                                       ccGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTTAAAGTCCTGTAATGGCCAGaccac                           >  1:1388143/1‑151 (MQ=14)
                                                                                                                            ccAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTGTGCTAGTGCTTGAAGTCCCAGAccccccccg                      >  5:850635/1‑148 (MQ=14)
                                                                                                                             ataaaTTTGAAAATTTCTGCACAT‑CACAGACGTCGGATGCGGGAATAGCTCTGTTGGTAGAGCAGGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGc                     <  1:1030328/149‑1 (MQ=14)
                                                                                                                               aaaTTTGAAAAGTCCTTAAAAT‑AACATACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCgg                   <  3:139343/151‑1 (MQ=17)
                                                                                                                                aaTTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAATTGCTGTAAGGGACAGACCACCCAAGCggg                  >  7:736172/1‑151 (MQ=255)
                                                                                                                                aaTTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTGCAATGGCTCTCAGGGGCAGACCAcccctccggg                  >  8:719387/1‑144 (MQ=14)
                                                                                                                                   ttGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGATAGTGATATAATGAACAGACCAccccgaggggaat               >  2:443596/1‑141 (MQ=17)
                                                                                                                                      aaaaGTGCTCCAAAT‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGc            <  6:573605/151‑1 (MQ=255)
                                                                                                                                       aaattcctccAAAT‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCt           <  7:1264677/142‑1 (MQ=255)
                                                                                                                                         aGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAATAGCTGTAAGGAACACAGCCCCCACGCCGGAATAGcac          >  7:225408/1‑148 (MQ=17)
                                                                                                                                             ctgcAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAACGGCCTGTAAGGGCCACAGCGCCCCGCCGGGAATAggctcgttg     >  6:1012375/1‑143 (MQ=14)
                                                                                                                                                cAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGAGCTGAAAGTGACAGACCACCCAAGGGGGAATAGCTGAGtttttt  >  1:1080555/1‑147 (MQ=17)
                                                                                                                                                cAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATATTAAAGTGATGTAAGGGACAGACCCACCACCCGGGATTATGTGAGTTGGtt  >  6:442364/1‑150 (MQ=14)
                                                                                                                                                    |                                                                                                                                                   
CCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAG‑CACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTA  >  NC_000913/4392309‑4392603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑